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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 96ChIP-seq
  • 23DNase-seq
  • 17WGBS
  • 12ATAC-seq
  • 5GRO-seq
Assay category
  • 96DNA binding
  • 35DNA accessibility
  • 17DNA methylation
Target of assay
  • 87histone
  • 87histone modification
  • 56broad histone mark
  • 31narrow histone mark
  • 9transcription factor
  • 6RNA binding protein
  • 3recombinant protein
Date released
  • 53November, 2017
  • 40May, 2024
  • 23June, 2019
  • 9July, 2019
  • 9November, 2018
  • 7August, 2020
  • 5January, 2018
  • 3September, 2020
  • 2August, 2017
  • 1August, 2021
  • 1October, 2017
Available data
  • 394bam
  • 350fastq
  • 219bed narrowPeak
  • 198tsv
  • 160tagAlign
  • 157txt
  • 153bigWig
  • 153zippedFastqFolder
  • 79bigBed narrowPeak
  • 64xls
  • 24bed broadPeak
  • 23bed bed3+
  • 23bigBed broadPeak
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 8csv
  • 2bedpe bed3+
  • 1hic
  • 1vcf
Organism
  • 153Homo sapiens
Biosample type
  • 125tissue
  • 17primary cell
  • 5cell line
  • 5in vitro differentiated cells
  • 1stem cell
Organ
  • 63brain
  • 49heart
  • 16epithelium
  • 16pancreas
  • 7kidney
  • 5liver
  • 3connective tissue
  • 2adipose tissue
  • 2blood vessel
  • 2spleen
  • 2vasculature
  • 1embryo
  • 1limb
  • 1musculature of body
Project
  • 143AMP
  • 10HPAP
Genome assembly (visualization)
  • hg19
  • 2930GRCh38
  • 5hg18
Lab
  • 103AMP-T2D consortium
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
assembly!
  • hg19
BIOSAMPLE
ASSAY

153 results

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Clear Filters
ChIP-seq
DNase-seq
WGBS
ATAC-seq
GRO-seq
tissue
left cardiac atrium40
layer of hippocampus16
caudate nucleus111
substantia nigra10
middle frontal area 469
primary cell
pancreatic alpha cell7
pancreatic beta cell3
glomerular visceral epithelial cell2
kidney tubule cell2
cardiac fibroblast1
cell line
HepG241
in vitro differentiated cells
Posterior foregut1
definitive endodermal cell1
neural progenitor cell1
pancreatic endoderm1
primitive gut cell1
stem cell
hESC1
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