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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 153ChIP-seq
  • 98total RNA-seq
  • 36single cell RNA-seq
  • 27snATAC-seq
  • 17WGBS
  • 12ATAC-seq
  • 5GRO-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 153DNA binding
  • 134Transcription
  • 39DNA accessibility
  • 17DNA methylation
  • 13D chromatin structure
Target of assay
  • 142control
  • 9transcription factor
  • 4recombinant protein
  • 3RNA binding protein
  • 2histone
  • 2histone modification
  • 1broad histone mark
  • 1narrow histone mark
Date released
  • 76February, 2023
  • 49November, 2017
  • 45February, 2021
  • 41September, 2020
  • 32August, 2017
  • 27October, 2018
  • 17December, 2017
  • 17November, 2018
  • 8February, 2018
  • 7August, 2020
  • 6May, 2022
  • 5December, 2018
  • 5January, 2018
  • 4January, 2019
  • 4October, 2017
  • 4September, 2017
  • 1August, 2018
  • 1March, 2019
  • 1September, 2018
Available data
  • 394bam
  • 350fastq
  • 219bed narrowPeak
  • 198tsv
  • 160tagAlign
  • 157txt
  • 153bigWig
  • 153zippedFastqFolder
  • 79bigBed narrowPeak
  • 64xls
  • 24bed broadPeak
  • 23bed bed3+
  • 23bigBed broadPeak
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 8csv
  • 2bedpe bed3+
  • 1hic
  • 1vcf
Organism
  • 349Homo sapiens
Biosample type
  • 183primary cell
  • 83tissue
  • 60cell line
  • 23in vitro differentiated cells
  • 1stem cell
Organ
  • 108pancreas
  • 84epithelium
  • 75liver
  • 28connective tissue
  • 23adipose tissue
  • 10spleen
  • 8embryo
  • 6blood
  • 6bodily fluid
  • 4brain
Project
  • 181AMP
  • 169HPAP
Genome assembly (visualization)
  • hg19
  • 951GRCh38
  • 5hg18
Lab
  • 174AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 6Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 27audit script error
  • 2inconsistent ontology term
Audit category:
  • 3missing controlled_by
assembly!
  • hg19
BIOSAMPLE
ASSAY

350 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ATAC-seq
GRO-seq
Hi-C
pCHi-C
primary cell
Langerhans cell3427
pancreatic alpha cell64267
exocrine cell39
pancreatic beta cell6113
pancreatic cell2
tissue
liver161
islet of Langerhans561
body of pancreas82
spleen82
subcutaneous adipose tissue10
cell line
HepG25211
GM128786
in vitro differentiated cells
pancreatic endoderm51
adipocyte5
Hepatic endoderm2
definitive endodermal cell11
primitive gut cell11
stem cell
hESC1
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