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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 105single cell RNA-seq
  • 39total RNA-seq
  • 31pCHi-C
  • 12ATAC-seq
  • 6WGBS
  • 3snDrop-seq
  • 2RNA microarray
Assay category
  • 144Transcription
  • 12DNA accessibility
  • 6DNA methylation
Date released
  • 108August, 2021
  • 30March, 2020
  • 25February, 2020
  • 16February, 2023
  • 14February, 2021
  • 4December, 2019
  • 1May, 2020
Available data
  • 394bam
  • 350fastq
  • 219bed narrowPeak
  • 198tsv
  • 160tagAlign
  • 157txt
  • 153bigWig
  • 153zippedFastqFolder
  • 79bigBed narrowPeak
  • 64xls
  • 24bed broadPeak
  • 23bed bed3+
  • 23bigBed broadPeak
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 8csv
  • 2bedpe bed3+
  • 1hic
  • 1vcf
Organism
  • 198Homo sapiens
Biosample type
  • 158tissue
  • 18primary cell
  • 14cell line
  • 4in vitro differentiated cells
  • 4stem cell
Organ
  • 98heart
  • 14brain
  • 12kidney
  • 12liver
  • 10blood vessel
  • 10vasculature
  • 9epithelium
  • 9pancreas
  • 5eye
  • 4artery
  • 4connective tissue
  • 3adipose tissue
  • 3limb
  • 3musculature of body
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 192AMP
  • 6HPAP
Genome assembly (visualization)
  • hg19
  • 1400GRCh38
Lab
  • 182AMP-T2D consortium
  • 10Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
Audit category:
  • 15inconsistent ontology term
  • 9audit script error
assembly!
  • hg19
BIOSAMPLE
ASSAY

198 results

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Clear Filters
single cell RNA-seq
total RNA-seq
pCHi-C
ATAC-seq
WGBS
snDrop-seq
RNA microarray
tissue
heart left ventricle181
right cardiac atrium181
heart right ventricle171
left cardiac atrium18
aorta41
primary cell
pancreatic alpha cell6
gabaergic neuron3
glutamatergic neuron3
microglial cell/astrocyte3
oligodendrocyte3
cell line
HepG291
MCF-71
RCC 7860 VHL1
RCC 7860 vector1
fibroblast cell line1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)21
embryonic stem cell1
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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