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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 18ChIP-seq
  • 6WGBS
  • 5GRO-seq
  • 3single cell RNA-seq
  • 2ATAC-seq
Assay category
  • 18DNA binding
  • 6DNA methylation
  • 3Transcription
  • 2DNA accessibility
Target of assay
  • 15control
  • 2RNA binding protein
  • 2transcription factor
  • 1histone
  • 1histone modification
  • 1narrow histone mark
Date released
  • 6December, 2017
  • 5August, 2017
  • 5January, 2018
  • 5November, 2017
  • 4November, 2018
  • 4October, 2018
  • 1January, 2019
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 33fastq
  • 24bam
  • 11bigWig
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2csv
  • 1bed broadPeak
  • 1bed narrowPeak
  • 1bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 34Homo sapiens
Biosample type
  • 15tissue
  • 9in vitro differentiated cells
  • 6cell line
  • 3primary cell
  • 1stem cell
Organ
  • 8liver
  • 7pancreas
  • 5embryo
  • 4adipose tissue
  • 4connective tissue
  • 3epithelium
  • 1blood
  • 1bodily fluid
  • 1brain
  • 1spleen
Project
  • 33AMP
  • 1HPAP
Genome assembly (visualization)
  • 158GRCh38
  • hg19
  • 5hg18
Lab
  • 32AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 2inconsistent ontology term
Audit category:
  • 1missing controlled_by
assembly!
  • hg19
BIOSAMPLE
ASSAY

34 results

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Clear Filters
ChIP-seq
WGBS
GRO-seq
single cell RNA-seq
ATAC-seq
tissue
adipose tissue3
body of pancreas3
islet of Langerhans11
pancreas2
cerebellum (Hemisphere)1
in vitro differentiated cells
pancreatic endoderm21
Hepatic endoderm2
Posterior foregut1
definitive endodermal cell1
hepatocyte1
cell line
HepG25
GM128781
primary cell
pancreatic cell2
Langerhans cell1
stem cell
hESC1
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