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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 41ATAC-seq
  • 38ChIP-seq
  • 16snATAC-seq
  • 5GRO-seq
  • 1Hi-C
  • 1single cell RNA-seq
Assay category
  • 57DNA accessibility
  • 38DNA binding
  • 13D chromatin structure
  • 1Transcription
Target of assay
  • 37control
  • 1transcription factor
Date released
  • 39May, 2022
  • 22November, 2017
  • 16February, 2021
  • 10December, 2017
  • 5January, 2018
  • 3August, 2017
  • 3January, 2019
  • 1December, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2020
Available data
  • 62fastq
  • 40bam
  • 40zippedFastqFolder
  • 6bigWig
  • 1bed broadPeak
Organism
  • 102Homo sapiens
Biosample type
  • 56primary cell
  • 26cell line
  • 13tissue
  • 6in vitro differentiated cells
  • 1stem cell
Organ
  • 41pancreas
  • 40epithelium
  • 33liver
  • 3blood
  • 3bodily fluid
  • 3embryo
  • 1brain
Project
  • 56HPAP
  • 46AMP
Genome assembly (visualization)
  • hg19
  • 99GRCh38
  • 5hg18
Lab
  • 56Klaus Kaestner, Upenn
  • 45AMP-T2D consortium
  • 1Mark McCarthy, Oxford
Audit category:
  • 16audit script error
  • 1inconsistent ontology term
assembly!
  • hg19
BIOSAMPLE
ASSAY

102 results

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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
GRO-seq
Hi-C
single cell RNA-seq
primary cell
pancreatic alpha cell22
Langerhans cell161
pancreatic beta cell13
pancreatic acinar cell4
cell line
HepG2221
GM128783
tissue
liver10
islet of Langerhans11
cerebellum (Hemisphere)1
in vitro differentiated cells
pancreatic endoderm11
Hepatic endoderm1
Posterior foregut1
definitive endodermal cell1
primitive gut cell1
stem cell
hESC1
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