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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 26ChIP-seq
  • 10ATAC-seq
  • 1single cell RNA-seq
Assay category
  • 26DNA binding
  • 10DNA accessibility
  • 1Transcription
Target of assay
  • 22control
  • 4recombinant protein
  • 4transcription factor
Date released
  • 12October, 2018
  • 7August, 2020
  • 7November, 2018
  • 4September, 2020
  • 3November, 2017
  • 2December, 2017
  • 1August, 2017
  • 1January, 2019
Available data
  • 36fastq
  • 26bam
  • 13bigWig
  • 3bed narrowPeak
  • 3bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 37Homo sapiens
Biosample type
  • 17tissue
  • 11primary cell
  • 7cell line
  • 2in vitro differentiated cells
Organ
  • 13pancreas
  • 11epithelium
  • 10connective tissue
  • 9adipose tissue
  • 8liver
  • 4spleen
  • 1blood
  • 1bodily fluid
Project
  • 26AMP
  • 11HPAP
Genome assembly (visualization)
  • 180GRCh38
  • hg19
Lab
  • 26AMP-T2D consortium
  • 11Klaus Kaestner, Upenn
Audit category:
  • 1missing controlled_by
assembly!
  • hg19
BIOSAMPLE
ASSAY

37 results

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ChIP-seq
ATAC-seq
single cell RNA-seq
tissue
omental fat pad5
spleen4
subcutaneous adipose tissue4
body of pancreas3
right lobe of liver1
primary cell
pancreatic alpha cell7
pancreatic beta cell3
Langerhans cell1
cell line
HepG26
GM128781
in vitro differentiated cells
adipocyte1
hepatocyte1
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