Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 69single cell RNA-seq
  • 50ATAC-seq
  • 48snATAC-seq
  • 41ChIP-seq
  • 6total RNA-seq
  • 5WGBS
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 98DNA accessibility
  • 75Transcription
  • 41DNA binding
  • 5DNA methylation
  • 13D chromatin structure
Target of assay
  • 41control
Date released
  • 99May, 2022
  • 39February, 2021
  • 25September, 2020
  • 22October, 2018
  • 11November, 2018
  • 7August, 2020
  • 5December, 2018
  • 4August, 2017
  • 4November, 2017
  • 2December, 2017
  • 1August, 2018
  • 1March, 2019
  • 1September, 2018
Available data
  • 128fastq
  • 94zippedFastqFolder
  • 53bam
  • 15bigWig
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bed broadPeak
  • 1bedpe bed3+
Organism
  • 221Homo sapiens
Biosample type
  • 166primary cell
  • 46tissue
  • 8cell line
  • 1in vitro differentiated cells
Organ
  • 63pancreas
  • 49epithelium
  • 18adipose tissue
  • 18connective tissue
  • 12liver
  • 9spleen
  • 2blood
  • 2bodily fluid
Project
  • 164HPAP
  • 57AMP
Genome assembly (visualization)
  • hg19
  • 315GRCh38
Lab
  • 164Klaus Kaestner, Upenn
  • 50AMP-T2D consortium
  • 6Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 27audit script error
assembly!
  • hg19
BIOSAMPLE
ASSAY

221 results

search-icontable-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
snATAC-seq
ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell29
pancreatic beta cell16
pancreatic acinar cell4
pancreatic cell2
tissue
subcutaneous adipose tissue10
spleen72
body of pancreas52
islet of Langerhans16
omental fat pad7
cell line
HepG2411
GM128782
in vitro differentiated cells
white fat cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego