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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 69single cell RNA-seq
  • 52WGBS
  • 50ATAC-seq
  • 48snATAC-seq
  • 41ChIP-seq
  • 6total RNA-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 98DNA accessibility
  • 75Transcription
  • 52DNA methylation
  • 41DNA binding
  • 13D chromatin structure
Target of assay
  • 41control
Date released
  • 140May, 2022
  • 45February, 2021
  • 25September, 2020
  • 22October, 2018
  • 11November, 2018
  • 7August, 2020
  • 5December, 2018
  • 4August, 2017
  • 4November, 2017
  • 2December, 2017
  • 1August, 2018
  • 1March, 2019
  • 1September, 2018
Available data
  • 135zippedFastqFolder
  • 134fastq
  • 53bam
  • 15bigWig
  • 6tsv
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bed broadPeak
  • 1bedpe bed3+
Organism
  • 268Homo sapiens
Biosample type
  • 213primary cell
  • 46tissue
  • 8cell line
  • 1in vitro differentiated cells
Organ
  • 110pancreas
  • 96epithelium
  • 18adipose tissue
  • 18connective tissue
  • 12liver
  • 9spleen
  • 2blood
  • 2bodily fluid
Project
  • 211HPAP
  • 57AMP
Genome assembly (visualization)
  • hg19
  • 315GRCh38
Lab
  • 211Klaus Kaestner, Upenn
  • 50AMP-T2D consortium
  • 6Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 27audit script error
assembly!
  • hg19
BIOSAMPLE
ASSAY

268 results

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Clear Filters
single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
ChIP-seq
total RNA-seq
Hi-C
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell3129
pancreatic beta cell1616
pancreatic acinar cell4
pancreatic cell2
tissue
subcutaneous adipose tissue10
spleen27
body of pancreas25
islet of Langerhans16
omental fat pad7
cell line
HepG2141
GM128782
in vitro differentiated cells
white fat cell1
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