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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 112ChIP-seq
  • 92total RNA-seq
  • 19single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 1ATAC-seq
Assay category
  • 112DNA binding
  • 111Transcription
  • 6DNA methylation
  • 1DNA accessibility
Target of assay
  • 101control
  • 9transcription factor
  • 4recombinant protein
  • 3RNA binding protein
  • 2histone
  • 2histone modification
  • 1broad histone mark
  • 1narrow histone mark
Date released
  • 76February, 2023
  • 45November, 2017
  • 35September, 2020
  • 28August, 2017
  • 15December, 2017
  • 8February, 2018
  • 6November, 2018
  • 5January, 2018
  • 5October, 2018
  • 4January, 2019
  • 4October, 2017
  • 4September, 2017
Available data
  • 217fastq
  • 115bam
  • 19zippedFastqFolder
  • 14bigWig
  • 4bed bedMethyl
  • 4bed narrowPeak
  • 4bigBed bedMethyl
  • 4bigBed narrowPeak
  • 3tagAlign
Organism
  • 234Homo sapiens
Biosample type
  • 123primary cell
  • 52cell line
  • 37tissue
  • 22in vitro differentiated cells
  • 1stem cell
Organ
  • 78pancreas
  • 68epithelium
  • 63liver
  • 10connective tissue
  • 8embryo
  • 5adipose tissue
  • 4blood
  • 4bodily fluid
  • 4brain
  • 1spleen
Project
  • 124AMP
  • 111HPAP
Genome assembly (visualization)
  • hg19
  • 639GRCh38
  • 5hg18
Lab
  • 124AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 2inconsistent ontology term
Audit category:
  • 3missing controlled_by
assembly!
  • hg19
BIOSAMPLE
ASSAY

235 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
ATAC-seq
primary cell
pancreatic alpha cell642
exocrine cell39
Langerhans cell19
pancreatic beta cell611
cell line
HepG248
GM128784
tissue
liver121
islet of Langerhans5
pancreas32
adipose tissue13
body of pancreas3
in vitro differentiated cells
pancreatic endoderm51
adipocyte5
Hepatic endoderm2
definitive endodermal cell11
primitive gut cell11
stem cell
hESC1
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