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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
single cell RNA-seq
14
ChIP-seq
10
total RNA-seq
3
STARR-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
102
Transcription
14
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
2
broad histone mark
2
histone
2
histone modification
Date released
141
May, 2022
135
August, 2017
131
February, 2021
125
February, 2023
125
November, 2017
124
August, 2021
83
May, 2021
81
May, 2020
79
October, 2019
59
September, 2020
40
May, 2024
29
March, 2020
29
October, 2018
23
June, 2019
22
February, 2020
19
April, 2020
17
December, 2017
17
November, 2018
16
January, 2021
15
July, 2019
11
May, 2019
10
April, 2019
10
November, 2020
10
October, 2017
8
February, 2018
7
August, 2020
5
December, 2018
5
January, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
2
December, 2019
2
March, 2019
2
November, 2019
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
102
tsv
9
bam
9
tagAlign
1
bed narrowPeak
1
bedpe bed3+
1
bigWig
1
vcf
Organism
123
Homo sapiens
Biosample type
95
tissue
19
cell line
9
in vitro differentiated cells
1
primary cell
Organ
kidney
92
heart
17
liver
6
blood vessel
vasculature
4
pancreas
3
epithelium
2
artery
1
adipose tissue
1
connective tissue
Project
124
AMP
Genome assembly (visualization)
hg19
41
GRCh38
Lab
105
AMP-T2D consortium
19
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
assembly!
hg19
lab.title!
Karen Mohlke, UNC
organ_slims!
kidney
vasculature
BIOSAMPLE
ASSAY
124 results
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Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aortic valve
4
+ See 8 more…
cell line
HepG2
4
9
2
1
EndoC_BH1
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
9
primary cell
hepatocyte
1
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