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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ATAC-seq
61
total RNA-seq
55
ChIP-seq
51
WGBS
10
MeRIP-seq
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
pCHi-C
1
snATAC-seq
Assay category
73
DNA accessibility
61
Transcription
55
DNA binding
51
DNA methylation
1
3D chromatin structure
Target of assay
51
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
80
May, 2022
38
February, 2023
29
August, 2017
19
September, 2020
17
May, 2021
11
October, 2018
10
November, 2020
10
October, 2019
7
August, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
November, 2018
4
September, 2017
3
March, 2020
2
June, 2019
2
March, 2019
2
November, 2019
1
August, 2022
1
February, 2020
1
May, 2019
Available data
102
fastq
80
zippedFastqFolder
48
bam
16
bigWig
9
tsv
5
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
253
Homo sapiens
Biosample type
161
primary cell
59
tissue
34
cell line
1
in vitro differentiated cells
Organ
255
pancreas
220
kidney
213
epithelium
195
heart
166
liver
122
brain
94
connective tissue
88
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
12
nerve
11
spleen
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
149
HPAP
104
AMP
2
T1D
Genome assembly (visualization)
hg19
635
GRCh38
Lab
149
Klaus Kaestner, Upenn
92
AMP-T2D consortium
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
26
inconsistent ontology term
1
audit script error
assembly!
hg19
lab.title!
Kyle Gaulton, UCSD
month_released!
April, 2019
BIOSAMPLE
ASSAY
255 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
MeRIP-seq
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
snATAC-seq
primary cell
pancreatic alpha cell
29
42
6
31
pancreatic beta cell
16
11
6
16
pancreatic acinar cell
4
tissue
islet of Langerhans
5
7
19
4
1
1
body of pancreas
1
9
2
2
pancreas
3
2
1
endocrine pancreas
2
cell line
EndoC_BH1
16
2
6
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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