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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
36
DNA accessibility
23
DNA binding
9
Transcription
2
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
10
October, 2019
6
August, 2021
3
February, 2020
2
February, 2021
2
July, 2019
1
June, 2019
1
March, 2020
Available data
36
bed narrowPeak
26
bam
10
tsv
2
bigWig
2
tagAlign
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
71
Homo sapiens
Biosample type
63
tissue
6
primary cell
2
cell line
Organ
287
pancreas
225
kidney
213
epithelium
205
heart
166
liver
122
brain
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
71
AMP
Genome assembly (visualization)
191
GRCh38
hg19
Lab
71
AMP-T2D consortium
assembly!
hg19
lab.title!
Mark McCarthy, Oxford
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
71 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
DNase-seq
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
2
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
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primary cell
endothelial cell of umbilical vein
5
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
2
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