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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
40
single cell RNA-seq
23
total RNA-seq
19
ATAC-seq
17
pCHi-C
1
DNAme array
Assay category
63
Transcription
42
DNA binding
19
DNA accessibility
1
DNA methylation
Target of assay
24
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
12
transcription factor
6
control
5
RNA binding protein
Date released
257
August, 2021
161
May, 2022
139
February, 2021
135
August, 2017
125
February, 2023
125
November, 2017
92
October, 2019
83
May, 2021
81
May, 2020
59
September, 2020
47
September, 2023
40
May, 2024
32
March, 2020
31
June, 2019
29
October, 2018
23
February, 2020
21
May, 2019
19
April, 2020
17
December, 2017
17
July, 2019
17
November, 2018
16
January, 2021
15
April, 2019
14
May, 2023
10
October, 2017
8
February, 2018
7
August, 2020
5
December, 2018
5
December, 2019
5
January, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
2
March, 2019
2
November, 2019
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
41
fastq
19
zippedFastqFolder
3
bigWig
1
bam
1
tagAlign
Organism
142
Homo sapiens
Biosample type
81
primary cell
43
in vitro differentiated cells
16
cell line
2
tissue
Organ
37
pancreas
36
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
66
AMP
59
HPAP
17
T1D
Genome assembly (visualization)
hg19
279
GRCh38
Lab
60
Kyle Gaulton, UCSD
59
Klaus Kaestner, Upenn
23
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
assembly!
hg19
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
artery
BIOSAMPLE
ASSAY
142 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
pCHi-C
DNAme array
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
monocyte
1
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
+ See 13 more…
in vitro differentiated cells
embryonic stem cell
37
5
pancreatic PP cell
1
cell line
EndoC_BH1
16
tissue
pancreas
1
thymus
1
See all biosamples
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