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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 10total RNA-seq
  • 5STARR-seq
  • 4ChIP-seq
  • 1Hi-C
  • 1whole genome sequencing assay
Assay category
  • 10Transcription
  • 4DNA binding
  • 13D chromatin structure
  • 1DNA sequencing
Target of assay
  • 4control
Date released
  • 21August, 2021
Available data
  • 10tsv
  • 1bedpe bed3+
  • 1vcf
Organism
  • 21Homo sapiens
Biosample type
  • 19cell line
  • 2tissue
Organ
  • 16liver
  • 2kidney
  • 2pancreas
Project
  • 21AMP
Genome assembly (visualization)
  • hg19
  • 1GRCh38
Lab
  • 987AMP-T2D consortium
  • 321Klaus Kaestner, Upenn
  • 141Katalin Susztak, Upenn
  • 105Kyle Gaulton, UCSD
  • 47KPMP
  • 40Patrick T. Ellinor, Broad
  • 21Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 1inconsistent ontology term
assembly!
  • hg19
BIOSAMPLE
ASSAY

21 results

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total RNA-seq
STARR-seq
ChIP-seq
Hi-C
whole genome sequencing assay
cell line
HepG29241
HEK293T2
Synthesized DNA1
tissue
islet of Langerhans11
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