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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 37ChIP-seq
  • 18snATAC-seq
  • 17pCHi-C
  • 17total RNA-seq
  • 11ATAC-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
Assay category
  • 37DNA binding
  • 29DNA accessibility
  • 17Transcription
Target of assay
  • 20histone
  • 20histone modification
  • 12transcription factor
  • 10broad histone mark
  • 10narrow histone mark
  • 5RNA binding protein
  • 5control
Date released
  • 60May, 2021
  • 23February, 2023
  • 16January, 2021
  • 6May, 2022
Available data
  • 6bam
  • 6fastq
  • 6txt
Organism
  • 105Homo sapiens
Biosample type
  • 42in vitro differentiated cells
  • 34tissue
  • 24primary cell
  • 5cell line
Organ
  • 33pancreas
  • 8blood
  • 8bodily fluid
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • 56T1D
  • 49AMP
Genome assembly (visualization)
  • hg19
  • 180GRCh38
Lab
  • 987AMP-T2D consortium
  • 321Klaus Kaestner, Upenn
  • 141Katalin Susztak, Upenn
  • 105Kyle Gaulton, UCSD
  • 47KPMP
  • 40Patrick T. Ellinor, Broad
  • 21Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 1inconsistent ontology term
assembly!
  • hg19
BIOSAMPLE
ASSAY

105 results

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Clear Filters
ChIP-seq
snATAC-seq
pCHi-C
total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
in vitro differentiated cells
embryonic stem cell375
tissue
islet of Langerhans61111
pancreas41
thymus1
primary cell
peripheral blood mononuclear cell8
CD4-positive, alpha-beta T cell2
B cell1
CD8-positive, alpha-beta T cell1
activated CD4-positive, alpha-beta T cell1
cell line
EndoC_BH132
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