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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
36
DNA accessibility
23
DNA binding
9
Transcription
2
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
10
October, 2019
6
August, 2021
3
February, 2020
2
February, 2021
2
July, 2019
1
June, 2019
March, 2020
1
May, 2021
Available data
36
bed narrowPeak
26
bam
9
tsv
2
bigWig
2
tagAlign
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
71
Homo sapiens
Biosample type
62
tissue
7
primary cell
2
cell line
Organ
278
pancreas
223
kidney
206
epithelium
202
heart
165
liver
120
brain
93
connective tissue
89
bone element
70
blood vessel
70
vasculature
64
adipose tissue
48
artery
27
eye
26
limb
22
musculature of body
19
lung
14
blood
14
bodily fluid
12
nerve
10
spleen
8
embryo
5
vein
4
gonad
4
ovary
4
skeleton
1
bone marrow
1
lymph node
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
70
AMP
1
T1D
Genome assembly (visualization)
186
GRCh38
hg19
Lab
70
AMP-T2D consortium
1
Kyle Gaulton, UCSD
assembly!
hg19
month_released!
August, 2020
March, 2020
BIOSAMPLE
ASSAY
71 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
DNase-seq
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
2
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
+ See 1 more…
primary cell
endothelial cell of umbilical vein
5
kidney capillary endothelial cell
1
megakaryocyte
1
cell line
smooth muscle cell of the coronary artery
2
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