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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
93
single cell RNA-seq
38
ATAC-seq
17
total RNA-seq
14
WGBS
13
DNase-seq
7
pCHi-C
1
RNA microarray
Assay category
209
DNA binding
110
Transcription
51
DNA accessibility
14
DNA methylation
Target of assay
135
histone
135
histone modification
85
broad histone mark
69
control
50
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
93
August, 2021
76
November, 2017
42
August, 2017
40
May, 2024
36
February, 2023
18
October, 2018
17
February, 2020
15
June, 2019
10
April, 2019
10
October, 2017
9
July, 2019
9
May, 2019
8
October, 2019
6
March, 2020
2
February, 2021
1
August, 2018
Available data
140
bed narrowPeak
138
bam
115
tsv
114
bigWig
84
tagAlign
65
bigBed narrowPeak
27
fastq
13
bed bed3+
13
bed broadPeak
13
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
1
bedpe bed3+
Organism
391
Homo sapiens
Biosample type
386
tissue
3
primary cell
2
cell line
1
in vitro differentiated cells
Organ
288
pancreas
225
kidney
213
epithelium
205
heart
166
liver
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
5
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
392
AMP
Genome assembly (visualization)
907
GRCh38
hg19
Lab
352
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
hg19
month_released!
February, 2018
BIOSAMPLE
ASSAY
392 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
WGBS
DNase-seq
pCHi-C
RNA microarray
tissue
left cardiac atrium
40
18
coronary artery
2
35
1
subcutaneous abdominal adipose tissue
35
3
heart left ventricle
6
18
4
1
heart right ventricle
2
17
2
1
+ See 47 more…
primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
in vitro differentiated cells
white fat cell
1
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