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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
92
single cell RNA-seq
14
WGBS
5
pCHi-C
5
total RNA-seq
3
DNase-seq
1
RNA microarray
Assay category
114
DNA binding
97
Transcription
14
DNA methylation
3
DNA accessibility
Target of assay
65
histone
65
histone modification
44
control
40
broad histone mark
25
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
93
August, 2021
42
August, 2017
40
May, 2024
February, 2023
18
October, 2018
10
April, 2019
8
July, 2019
6
May, 2019
5
February, 2020
5
June, 2019
4
March, 2020
2
February, 2021
1
August, 2018
Available data
101
tsv
51
bigWig
50
bam
43
bed narrowPeak
23
fastq
9
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
1
bedpe bed3+
Organism
233
Homo sapiens
Biosample type
228
tissue
3
primary cell
2
cell line
1
in vitro differentiated cells
Organ
232
pancreas
225
kidney
173
epithelium
169
heart
166
liver
122
brain
91
connective tissue
85
bone element
65
adipose tissue
36
blood vessel
36
vasculature
26
limb
23
eye
23
musculature of body
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
0
pericardium
Project
234
AMP
Genome assembly (visualization)
656
GRCh38
hg19
Lab
194
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
assembly!
hg19
month_released!
February, 2023
BIOSAMPLE
ASSAY
234 results
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ChIP-seq
single cell RNA-seq
WGBS
pCHi-C
total RNA-seq
DNase-seq
RNA microarray
tissue
left cardiac atrium
40
18
subcutaneous abdominal adipose tissue
35
3
heart left ventricle
6
18
4
1
heart right ventricle
2
17
2
1
right cardiac atrium
1
18
1
1
+ See 14 more…
primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
in vitro differentiated cells
white fat cell
1
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