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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 566ChIP-seq
  • 262single cell RNA-seq
  • 212ATAC-seq
  • 155total RNA-seq
  • 87RNA microarray
  • 81snATAC-seq
  • 75WGBS
  • 53pCHi-C
  • 26DNase-seq
  • 10MeRIP-seq
  • 7Hi-C
  • 5GRO-seq
  • 5STARR-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 566DNA binding
  • 421Transcription
  • 319DNA accessibility
  • 78DNA methylation
  • 73D chromatin structure
  • 1DNA sequencing
Target of assay
  • 311control
  • 233histone
  • 233histone modification
  • 130broad histone mark
  • 103narrow histone mark
  • 27transcription factor
  • 14RNA binding protein
  • 5nucleotide modification
  • 4recombinant protein
Date released
  • 259August, 2021
  • 161May, 2022
  • February, 2023
  • 141February, 2021
  • 135August, 2017
  • 125November, 2017
  • 97October, 2019
  • 83May, 2021
  • 81May, 2020
  • 59September, 2020
  • 47September, 2023
  • 40May, 2024
  • 32March, 2020
  • 31June, 2019
  • 29October, 2018
  • 25February, 2020
  • 23May, 2019
  • 19April, 2020
  • 17December, 2017
  • 17July, 2019
  • 17November, 2018
  • 16January, 2021
  • 15April, 2019
  • 14May, 2023
  • 10November, 2020
  • 10October, 2017
  • 8February, 2018
  • 7August, 2020
  • 5December, 2018
  • 5December, 2019
  • 5January, 2018
  • 5March, 2023
  • 4January, 2019
  • 4July, 2018
  • 4September, 2017
  • 2March, 2019
  • 2November, 2019
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
  • 1September, 2018
Available data
  • 394bam
  • 274fastq
  • 184bed narrowPeak
  • 182tsv
  • 160tagAlign
  • 153bigWig
  • 153txt
  • 153zippedFastqFolder
  • 79bigBed narrowPeak
  • 64xls
  • 24bed broadPeak
  • 23bed bed3+
  • 23bigBed broadPeak
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 8csv
  • 2bedpe bed3+
  • 1hic
  • 1vcf
Organism
  • 1550Homo sapiens
Biosample type
  • 960tissue
  • 372primary cell
  • 126cell line
  • 93in vitro differentiated cells
  • 7stem cell
Organ
  • 232pancreas
  • 225kidney
  • 173epithelium
  • 169heart
  • 166liver
  • 122brain
  • 91connective tissue
  • 85bone element
  • 65adipose tissue
  • 36blood vessel
  • 36vasculature
  • 26limb
  • 23eye
  • 23musculature of body
  • 20lung
  • 14blood
  • 14bodily fluid
  • 13artery
  • 12nerve
  • 11spleen
  • 8embryo
  • 5gonad
  • 5ovary
  • 5vein
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 1207AMP
  • 245HPAP
  • 47KPMP
  • 35T1D
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • hg19
  • 3092GRCh38
  • 5hg18
Lab
  • 926AMP-T2D consortium
  • 245Klaus Kaestner, Upenn
  • 141Katalin Susztak, Upenn
  • 82Kyle Gaulton, UCSD
  • 47KPMP
  • 40Patrick T. Ellinor, Broad
  • 21Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 131inconsistent ontology term
  • 37audit script error
Audit category:
  • 3missing controlled_by
assembly!
  • hg19
month_released!
  • February, 2023
BIOSAMPLE
ASSAY

1558 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
DNase-seq
MeRIP-seq
Hi-C
GRO-seq
STARR-seq
snDrop-seq
Capture-C
RRBS
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
MPRA
...and 3 more
tissue
kidney76475496
islet of Langerhans4015275441
liver6212031
bone element84
left cardiac atrium4018
primary cell
Langerhans cell8548
pancreatic alpha cell6291531
pancreatic beta cell616116
naive thymus-derived CD4-positive, alpha-beta T cell22211
CD4-positive, alpha-beta memory T cell22
cell line
HepG25691112
EndoC_BH121662
Panc17
GM128786
EndoC-BH1
in vitro differentiated cells
embryonic stem cell3851
adipocyte19
neural progenitor cell9
pancreatic endoderm51
cardiomyocytes (cardiac muscle cell)21
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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