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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
35
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
2
pCHi-C
1
DNase-seq
Assay category
36
DNA accessibility
23
DNA binding
9
Transcription
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
86
February, 2021
35
February, 2023
11
May, 2019
10
October, 2019
6
August, 2021
3
February, 2020
July, 2019
1
June, 2019
1
March, 2020
1
May, 2021
Available data
84
txt
36
bed narrowPeak
24
bam
10
tsv
2
tagAlign
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
bigWig
Organism
154
Homo sapiens
Biosample type
145
tissue
7
primary cell
2
cell line
Organ
288
pancreas
225
kidney
213
epithelium
197
heart
165
liver
121
brain
95
connective tissue
89
bone element
69
blood vessel
69
vasculature
65
adipose tissue
48
artery
27
eye
21
limb
20
lung
18
musculature of body
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
153
AMP
1
T1D
Genome assembly (visualization)
237
GRCh38
hg19
Lab
153
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
assembly!
hg19
month_released!
July, 2019
organ_slims!
skeleton
BIOSAMPLE
ASSAY
154 results
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RNA microarray
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
pCHi-C
DNase-seq
tissue
bone element
84
coronary artery
35
2
1
aorta
2
4
1
tibial artery
5
1
ascending aorta
3
1
+ See 2 more…
primary cell
endothelial cell of umbilical vein
5
kidney capillary endothelial cell
1
megakaryocyte
1
cell line
smooth muscle cell of the coronary artery
2
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