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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ChIP-seq
30
total RNA-seq
5
WGBS
2
STARR-seq
1
DNase-seq
1
Hi-C
1
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
103
DNA binding
31
Transcription
5
DNA methylation
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
94
control
histone
20
histone modification
12
broad histone mark
9
transcription factor
8
narrow histone mark
4
recombinant protein
3
RNA binding protein
Date released
49
November, 2017
24
May, 2020
20
May, 2022
17
August, 2021
14
August, 2017
13
December, 2017
4
November, 2018
1
December, 2018
1
February, 2020
1
February, 2021
1
July, 2019
March, 2020
Available data
96
bam
75
fastq
27
tagAlign
11
tsv
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
145
Homo sapiens
Biosample type
72
tissue
71
cell line
1
in vitro differentiated cells
1
primary cell
Organ
276
pancreas
223
kidney
210
epithelium
167
heart
145
liver
89
bone element
67
blood vessel
vasculature
50
brain
50
connective tissue
48
artery
34
adipose tissue
25
eye
25
limb
19
lung
16
musculature of body
14
blood
14
bodily fluid
12
nerve
10
spleen
7
embryo
4
skeleton
2
vein
1
bone marrow
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
145
AMP
Genome assembly (visualization)
hg19
461
GRCh38
Lab
109
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
Audit category:
1
missing controlled_by
assembly!
hg19
month_released!
March, 2020
organ_slims!
vasculature
target.investigated_as!
histone
BIOSAMPLE
ASSAY
145 results
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ChIP-seq
total RNA-seq
WGBS
STARR-seq
DNase-seq
Hi-C
pCHi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
42
20
3
1
right lobe of liver
3
1
1
1
cell line
HepG2
56
9
1
2
1
1
1
in vitro differentiated cells
hepatocyte
1
primary cell
hepatocyte
1
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