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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
30
total RNA-seq
8
snATAC-seq
5
WGBS
3
pCHi-C
2
STARR-seq
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
129
DNA binding
31
Transcription
9
DNA accessibility
5
DNA methylation
1
3D chromatin structure
1
DNA sequencing
Target of assay
100
control
20
histone
20
histone modification
12
broad histone mark
9
transcription factor
8
narrow histone mark
4
recombinant protein
3
RNA binding protein
Date released
49
November, 2017
34
August, 2017
24
May, 2020
20
May, 2022
17
August, 2021
13
December, 2017
8
January, 2021
7
November, 2018
3
January, 2019
2
March, 2020
1
December, 2018
1
February, 2020
1
February, 2021
1
July, 2019
Available data
102
bam
81
fastq
44
tagAlign
13
tsv
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
181
Homo sapiens
Biosample type
94
tissue
77
cell line
9
primary cell
1
in vitro differentiated cells
Organ
288
pancreas
225
kidney
213
epithelium
205
heart
166
liver
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
173
AMP
8
T1D
Genome assembly (visualization)
hg19
585
GRCh38
Lab
137
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
hg19
month_released!
March, 2023
BIOSAMPLE
ASSAY
181 results
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Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
WGBS
pCHi-C
STARR-seq
DNase-seq
Hi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
62
20
3
1
1
right lobe of liver
3
1
1
1
bladder (urinary bladder)
1
cell line
HepG2
56
9
1
1
2
1
1
GM12878
6
primary cell
peripheral blood mononuclear cell
8
hepatocyte
1
in vitro differentiated cells
hepatocyte
1
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