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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ChIP-seq
30
total RNA-seq
8
snATAC-seq
5
WGBS
2
STARR-seq
1
DNase-seq
1
Hi-C
1
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
106
DNA binding
31
Transcription
9
DNA accessibility
5
DNA methylation
1
3D chromatin structure
1
DNA sequencing
Target of assay
77
control
20
histone
20
histone modification
12
broad histone mark
9
transcription factor
8
narrow histone mark
4
recombinant protein
3
RNA binding protein
Date released
49
November, 2017
34
August, 2017
May, 2020
20
May, 2022
17
August, 2021
13
December, 2017
8
January, 2021
7
November, 2018
3
January, 2019
1
December, 2018
1
February, 2020
1
February, 2021
1
July, 2019
1
March, 2020
Available data
81
fastq
79
bam
21
tagAlign
11
tsv
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
156
Homo sapiens
Biosample type
76
cell line
70
tissue
9
primary cell
1
in vitro differentiated cells
Organ
284
pancreas
225
kidney
213
epithelium
205
heart
142
liver
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
148
AMP
8
T1D
Genome assembly (visualization)
hg19
423
GRCh38
Lab
112
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
8
Kyle Gaulton, UCSD
Audit category:
1
missing controlled_by
assembly!
hg19
month_released!
May, 2020
September, 2017
BIOSAMPLE
ASSAY
156 results
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Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
WGBS
STARR-seq
DNase-seq
Hi-C
pCHi-C
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
56
9
1
2
1
1
GM12878
6
tissue
liver
39
20
3
1
1
right lobe of liver
3
1
1
1
primary cell
peripheral blood mononuclear cell
8
hepatocyte
1
in vitro differentiated cells
hepatocyte
1
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