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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
40
ChIP-seq
35
ATAC-seq
8
WGBS
3
DNase-seq
3
pCHi-C
3
total RNA-seq
Assay category
96
Transcription
40
DNA binding
38
DNA accessibility
8
DNA methylation
Target of assay
35
histone
35
histone modification
broad histone mark
20
control
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
36
February, 2023
20
May, 2024
10
April, 2019
8
July, 2019
6
May, 2019
5
June, 2019
3
February, 2020
3
March, 2020
2
February, 2021
Available data
98
tsv
58
bed narrowPeak
29
bam
29
bigWig
6
bed bedMethyl
6
bigBed bedMethyl
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
2
tagAlign
Organism
185
Homo sapiens
Biosample type
180
tissue
3
primary cell
2
cell line
Organ
225
kidney
197
pancreas
185
heart
134
liver
131
epithelium
89
bone element
77
brain
69
blood vessel
69
vasculature
67
connective tissue
48
artery
45
adipose tissue
27
eye
26
limb
20
lung
18
musculature of body
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
4
skeleton
3
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
185
AMP
Genome assembly (visualization)
209
GRCh38
hg19
Lab
165
AMP-T2D consortium
20
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
assembly!
hg19
month_released!
May, 2022
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
185 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
total RNA-seq
tissue
coronary artery
2
35
1
left cardiac atrium
18
20
heart left ventricle
18
6
4
1
heart right ventricle
17
2
2
1
right cardiac atrium
18
1
1
1
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primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
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