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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
12
total RNA-seq
10
DNase-seq
2
ATAC-seq
2
pCHi-C
Assay category
86
DNA binding
12
DNA accessibility
12
Transcription
Target of assay
64
histone
64
histone modification
40
broad histone mark
24
narrow histone mark
22
control
Date released
76
November, 2017
12
February, 2020
10
June, 2019
October, 2017
8
October, 2019
3
May, 2019
2
March, 2020
1
July, 2019
Available data
85
bam
67
tagAlign
62
bed narrowPeak
62
bigBed narrowPeak
62
bigWig
14
tsv
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
Organism
112
Homo sapiens
Biosample type
112
tissue
Organ
288
pancreas
225
kidney
213
epithelium
205
heart
166
liver
112
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
112
AMP
Genome assembly (visualization)
210
GRCh38
hg19
Lab
112
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
hg19
month_released!
October, 2017
organ_slims!
thymus
BIOSAMPLE
ASSAY
112 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
pCHi-C
tissue
layer of hippocampus
22
caudate nucleus
14
1
1
substantia nigra
14
1
cingulate gyrus
12
middle frontal area 46
12
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