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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
35
snATAC-seq
18
single cell RNA-seq
7
ATAC-seq
6
WGBS
3
ChIP-seq
3
snDrop-seq
Assay category
42
DNA accessibility
18
Transcription
6
DNA methylation
3
DNA binding
Target of assay
3
control
Date released
259
August, 2021
161
May, 2022
160
February, 2023
141
February, 2021
135
August, 2017
125
November, 2017
97
October, 2019
83
May, 2021
81
May, 2020
59
September, 2020
47
September, 2023
40
May, 2024
32
March, 2020
31
June, 2019
29
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
December, 2017
17
July, 2019
15
April, 2019
14
May, 2023
14
November, 2018
10
November, 2020
10
October, 2017
8
February, 2018
8
January, 2021
7
August, 2020
5
December, 2018
5
December, 2019
5
January, 2018
5
March, 2023
4
July, 2018
4
September, 2017
2
March, 2019
2
November, 2019
1
August, 2018
1
August, 2022
1
January, 2019
1
October, 2022
1
September, 2018
Available data
89
txt
52
fastq
14
tsv
7
bigWig
6
csv
3
bam
3
tagAlign
Organism
156
Homo sapiens
Biosample type
101
tissue
52
primary cell
3
cell line
Organ
84
bone element
21
pancreas
13
epithelium
8
blood
bodily fluid
8
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
1
liver
Project
96
AMP
52
HPAP
8
T1D
Genome assembly (visualization)
575
GRCh38
hg19
Lab
96
AMP-T2D consortium
52
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
32
audit script error
assembly!
hg19
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
156 results
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RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
ChIP-seq
snDrop-seq
tissue
bone element
84
kidney
5
islet of Langerhans
4
pancreas
4
kidney (Cortex-Medulla)
1
+ See 3 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
5
6
pancreatic beta cell
2
cell line
smooth muscle cell of the coronary artery
2
iPSC derived cell line
1
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