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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ATAC-seq
46
ChIP-seq
43
total RNA-seq
40
single cell RNA-seq
1
pCHi-C
Assay category
83
Transcription
58
DNA accessibility
46
DNA binding
Target of assay
46
control
Date released
259
August, 2021
161
May, 2022
160
February, 2023
141
February, 2021
135
August, 2017
125
November, 2017
97
October, 2019
83
May, 2021
81
May, 2020
59
September, 2020
47
September, 2023
40
May, 2024
32
March, 2020
31
June, 2019
29
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
December, 2017
17
July, 2019
17
November, 2018
16
January, 2021
15
April, 2019
14
May, 2023
10
November, 2020
10
October, 2017
8
February, 2018
7
August, 2020
5
December, 2018
5
December, 2019
5
January, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
2
March, 2019
2
November, 2019
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
46
bam
41
fastq
26
tsv
23
tagAlign
19
zippedFastqFolder
3
bigWig
Organism
188
Homo sapiens
Biosample type
117
primary cell
70
tissue
1
cell line
Organ
25
liver
21
pancreas
20
epithelium
15
brain
14
blood vessel
14
vasculature
9
heart
4
artery
4
limb
3
musculature of body
2
adipose tissue
2
connective tissue
1
eye
1
kidney
1
nerve
1
spinal cord
Project
129
AMP
59
HPAP
Genome assembly (visualization)
hg19
306
GRCh38
Lab
129
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
assembly!
hg19
BIOSAMPLE
ASSAY
188 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
pCHi-C
primary cell
Langerhans cell
40
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
pancreatic alpha cell
2
15
macrophage
11
+ See 3 more…
tissue
liver
23
ascending aorta
3
1
right atrium auricular region
3
1
thoracic aorta
4
coronary artery
2
1
+ See 28 more…
cell line
HepG2
1
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