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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 93total RNA-seq
  • 58ATAC-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1single cell RNA-seq
Assay category
  • 94Transcription
  • 60DNA accessibility
Date released
  • 259August, 2021
  • 161May, 2022
  • 160February, 2023
  • 141February, 2021
  • 135August, 2017
  • 125November, 2017
  • 97October, 2019
  • 83May, 2021
  • 81May, 2020
  • 59September, 2020
  • 47September, 2023
  • 40May, 2024
  • 32March, 2020
  • 31June, 2019
  • 29October, 2018
  • 25February, 2020
  • 23May, 2019
  • 19April, 2020
  • 17December, 2017
  • 17July, 2019
  • 17November, 2018
  • 16January, 2021
  • 15April, 2019
  • 14May, 2023
  • 10November, 2020
  • 10October, 2017
  • 8February, 2018
  • 7August, 2020
  • 5December, 2018
  • 5December, 2019
  • 5January, 2018
  • 5March, 2023
  • 4January, 2019
  • 4July, 2018
  • 4September, 2017
  • 2March, 2019
  • 2November, 2019
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
  • 1September, 2018
Available data
  • 76fastq
  • 35bed narrowPeak
  • 16tsv
  • 4txt
Organism
  • 159Homo sapiens
Biosample type
  • 88primary cell
  • 62tissue
  • 6cell line
  • 4in vitro differentiated cells
Organ
  • 56pancreas
  • 40epithelium
  • 36heart
  • 35artery
  • 35blood vessel
  • 35vasculature
  • 4bone element
  • 4connective tissue
  • 4eye
  • 4skeleton
Project
  • 76HPAP
  • 61AMP
  • 23T1D
Genome assembly (visualization)
  • hg19
  • 35GRCh38
Lab
  • 76Klaus Kaestner, Upenn
  • 61AMP-T2D consortium
  • 23Kyle Gaulton, UCSD
Audit category:
  • 8inconsistent ontology term
assembly!
  • hg19
BIOSAMPLE
ASSAY

160 results

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Clear Filters
total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
primary cell
exocrine cell39
pancreatic alpha cell27
pancreatic beta cell10
gabaergic neuron3
glutamatergic neuron3
tissue
coronary artery35
islet of Langerhans5112
pigmented layer of retina2
retina2
acetabular part of hip bone1
cell line
EndoC_BH1321
in vitro differentiated cells
immature adipocyte2
adipocyte1
preadipocyte1
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