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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
WGBS
39
ATAC-seq
35
single cell RNA-seq
26
total RNA-seq
21
snATAC-seq
9
ChIP-seq
Assay category
61
Transcription
60
DNA accessibility
48
DNA methylation
9
DNA binding
Target of assay
6
control
3
recombinant protein
3
transcription factor
Date released
257
August, 2021
161
May, 2022
160
February, 2023
141
February, 2021
81
May, 2020
72
October, 2019
61
November, 2017
59
August, 2017
59
May, 2021
59
September, 2020
47
September, 2023
32
March, 2020
31
June, 2019
29
October, 2018
25
February, 2020
23
May, 2019
April, 2020
17
July, 2019
17
November, 2018
16
December, 2017
16
January, 2021
15
April, 2019
14
May, 2023
10
November, 2020
8
February, 2018
7
August, 2020
5
December, 2018
5
December, 2019
5
January, 2018
5
March, 2023
5
May, 2024
4
January, 2019
4
July, 2018
4
October, 2017
4
September, 2017
2
March, 2019
2
November, 2019
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
134
zippedFastqFolder
23
fastq
22
bam
9
bigWig
7
bed bedMethyl
7
bigBed bedMethyl
6
txt
2
bed narrowPeak
2
bigBed narrowPeak
1
csv
Organism
178
Homo sapiens
Biosample type
135
primary cell
36
tissue
7
cell line
Organ
90
pancreas
80
epithelium
24
liver
5
spleen
3
blood
3
bodily fluid
1
musculature of body
Project
134
HPAP
44
AMP
Genome assembly (visualization)
hg19
79
GRCh38
Lab
134
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
18
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
1
missing controlled_by
assembly!
hg19
month_released!
April, 2020
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
178 results
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WGBS
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
ChIP-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
pancreatic cell
1
tissue
liver
20
islet of Langerhans
6
spleen
2
3
body of pancreas
2
pancreas
2
+ See 1 more…
cell line
HepG2
1
3
GM12878
3
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