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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 511ChIP-seq
  • 263single cell RNA-seq
  • 189ATAC-seq
  • 175total RNA-seq
  • 87RNA microarray
  • 72snATAC-seq
  • 52pCHi-C
  • 24DNase-seq
  • 24WGBS
  • 6Hi-C
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 511DNA binding
  • 442Transcription
  • 285DNA accessibility
  • 27DNA methylation
  • 63D chromatin structure
  • 1DNA sequencing
Target of assay
  • 260control
  • 224histone
  • 224histone modification
  • 125broad histone mark
  • 99narrow histone mark
  • 27transcription factor
  • 14RNA binding protein
  • 4recombinant protein
Date released
  • 255August, 2021
  • 135February, 2021
  • 125November, 2017
  • 106August, 2017
  • 104February, 2023
  • 87October, 2019
  • 81May, 2020
  • 75May, 2022
  • 65May, 2021
  • 47September, 2023
  • 40May, 2024
  • 40September, 2020
  • 29June, 2019
  • 29March, 2020
  • 24February, 2020
  • 22May, 2019
  • 19April, 2020
  • 18October, 2018
  • 17December, 2017
  • 17July, 2019
  • 15April, 2019
  • 14May, 2023
  • 13November, 2018
  • 10October, 2017
  • 8February, 2018
  • 8January, 2021
  • 5December, 2018
  • 5December, 2019
  • 5January, 2018
  • 5March, 2023
  • 4January, 2019
  • 1August, 2018
  • 1October, 2022
  • 1September, 2018
Available data
  • 340bam
  • 242fastq
  • 217bed narrowPeak
  • 189tsv
  • 155tagAlign
  • 151txt
  • 137bigWig
  • 77bigBed narrowPeak
  • 73zippedFastqFolder
  • 64xls
  • 21bed bed3+
  • 21bed broadPeak
  • 21bigBed broadPeak
  • 13bed bedMethyl
  • 13bigBed bedMethyl
  • 8csv
  • 1bedpe bed3+
  • 1hic
  • 1vcf
Organism
  • 1423Homo sapiens
Biosample type
  • 930tissue
  • 299primary cell
  • 98cell line
  • 96in vitro differentiated cells
  • 7stem cell
Organ
  • pancreas
  • 225kidney
  • 213epithelium
  • 205heart
  • 166liver
  • 122brain
  • 95connective tissue
  • 89bone element
  • 71blood vessel
  • 71vasculature
  • 65adipose tissue
  • 48artery
  • 27eye
  • 26limb
  • 23musculature of body
  • 20lung
  • 14blood
  • 14bodily fluid
  • 12nerve
  • 11spleen
  • 8embryo
  • 5gonad
  • 5ovary
  • 5vein
  • 4skeleton
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 1157AMP
  • 172HPAP
  • 47KPMP
  • 30T1D
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • hg19
  • 2492GRCh38
  • 5hg18
Lab
  • 895AMP-T2D consortium
  • 172Klaus Kaestner, Upenn
  • 141Katalin Susztak, Upenn
  • 72Kyle Gaulton, UCSD
  • 47KPMP
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 19Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
  • 1ITG
Audit category:
  • 113inconsistent ontology term
  • 36audit script error
Audit category:
  • 3missing controlled_by
assembly!
  • hg19
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

1430 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
DNase-seq
WGBS
Hi-C
GRO-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
RRBS
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
MPRA
...and 3 more
tissue
kidney76475496
liver6212013
bone element84
left cardiac atrium4018
islet of Langerhans2110144
primary cell
Langerhans cell8548
exocrine cell39
naive thymus-derived CD4-positive, alpha-beta T cell22211
CD4-positive, alpha-beta memory T cell22
macrophage111
cell line
HepG25691112
GM128786
EndoC_BH132
EndoC-BH1
HEK293T2
in vitro differentiated cells
embryonic stem cell3851
adipocyte191
neural progenitor cell9
pancreatic endoderm51
cardiomyocytes (cardiac muscle cell)21
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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