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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
6
WGBS
2
pCHi-C
2
total RNA-seq
1
RNA microarray
Assay category
30
DNA binding
6
DNA methylation
2
Transcription
Target of assay
30
histone
30
histone modification
control
20
broad histone mark
10
narrow histone mark
Date released
36
August, 2017
2
February, 2020
1
August, 2018
1
August, 2021
1
March, 2020
Available data
6
tagAlign
4
fastq
3
tsv
2
bam
2
bed bedMethyl
2
bigBed bedMethyl
2
bigWig
1
bedpe bed3+
Organism
40
Homo sapiens
Biosample type
40
tissue
1
in vitro differentiated cells
Organ
237
pancreas
213
kidney
185
epithelium
185
heart
97
brain
89
bone element
72
liver
61
connective tissue
51
blood vessel
vasculature
41
adipose tissue
39
artery
26
eye
20
lung
17
musculature of body
9
limb
8
blood
8
bodily fluid
5
gonad
5
ovary
4
skeleton
3
spleen
3
vein
2
embryo
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
41
AMP
Genome assembly (visualization)
hg19
424
GRCh38
Lab
41
AMP-T2D consortium
assembly!
hg19
organ_slims!
vasculature
target.investigated_as!
control
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
WGBS
pCHi-C
total RNA-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
30
3
adipose tissue
3
1
subcutaneous adipose tissue
1
1
omental fat pad
1
in vitro differentiated cells
white fat cell
1
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