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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
6
WGBS
3
pCHi-C
2
total RNA-seq
1
GRO-seq
1
RNA microarray
Assay category
61
DNA binding
6
DNA methylation
2
Transcription
Target of assay
31
histone
31
histone modification
30
control
20
broad histone mark
11
narrow histone mark
Date released
42
August, 2017
18
October, 2018
4
December, 2017
3
February, 2018
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
January, 2018
Available data
31
fastq
28
bam
7
tagAlign
4
tsv
3
bigWig
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
73
Homo sapiens
Biosample type
65
tissue
9
in vitro differentiated cells
Organ
288
pancreas
225
kidney
213
epithelium
205
heart
166
liver
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
74
AMP
Genome assembly (visualization)
hg19
453
GRCh38
1
hg18
Lab
74
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
hg19
organ_slims!
gonad
BIOSAMPLE
ASSAY
74 results
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ChIP-seq
WGBS
pCHi-C
total RNA-seq
GRO-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
3
1
sigmoid colon
1
in vitro differentiated cells
pancreatic endoderm
5
1
Hepatic endoderm
2
white fat cell
1
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