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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 77ChIP-seq
  • 6WGBS
  • 6total RNA-seq
  • 4pCHi-C
  • 1DNase-seq
  • 1RNA microarray
Assay category
  • 77DNA binding
  • 6DNA methylation
  • 6Transcription
  • 1DNA accessibility
Target of assay
  • 43histone
  • 43histone modification
  • 34control
  • 28broad histone mark
  • 15narrow histone mark
Date released
  • 61August, 2017
  • 18October, 2018
  • 4February, 2023
  • 4June, 2019
  • 2February, 2020
  • 2March, 2020
  • 1August, 2018
  • 1August, 2021
  • 1May, 2021
  • 1October, 2019
Available data
  • 30bam
  • 28fastq
  • 21tagAlign
  • 4tsv
  • 3bigWig
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3+
  • 1bed broadPeak
  • 1bed narrowPeak
  • 1bedpe bed3+
  • 1bigBed broadPeak
  • 1bigBed narrowPeak
Organism
  • 94Homo sapiens
Biosample type
  • 65tissue
  • 24in vitro differentiated cells
  • 5primary cell
  • 1stem cell
Organ
  • 288pancreas
  • 225kidney
  • 213epithelium
  • 205heart
  • 166liver
  • 122brain
  • 95connective tissue
  • 89bone element
  • 71blood vessel
  • 71vasculature
  • 65adipose tissue
  • 48artery
  • 27eye
  • 26limb
  • 23musculature of body
  • 20lung
  • 14blood
  • 14bodily fluid
  • 12nerve
  • 11spleen
  • 8embryo
  • 5gonad
  • 5ovary
  • 5vein
  • 4skeleton
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 94AMP
  • 1T1D
Genome assembly (visualization)
  • hg19
  • 566GRCh38
Lab
  • 94AMP-T2D consortium
  • 1Kyle Gaulton, UCSD
Audit category:
  • 5inconsistent ontology term
assembly!
  • hg19
BIOSAMPLE
ASSAY

95 results

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Clear Filters
ChIP-seq
WGBS
total RNA-seq
pCHi-C
DNase-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue353
subcutaneous adipose tissue1011
omental fat pad81
adipose tissue131
islet of Langerhans1
in vitro differentiated cells
adipocyte191
immature adipocyte2
preadipocyte1
white fat cell1
primary cell
cardiac fibroblast21
adult endothelial progenitor cell1
mesenchymal stem cell1
stem cell
mesenchymal stem cell1
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