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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
4
Hi-C
2
RRBS
2
total RNA-seq
1
GRO-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
19
DNA binding
4
3D chromatin structure
3
DNA methylation
3
Transcription
Target of assay
12
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
11
August, 2017
5
July, 2019
4
December, 2017
3
February, 2018
2
February, 2020
2
June, 2019
1
January, 2018
1
March, 2020
1
May, 2019
1
May, 2022
Available data
11
bam
8
fastq
3
tsv
2
bigWig
2
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
31
Homo sapiens
Biosample type
21
tissue
8
in vitro differentiated cells
2
primary cell
Organ
288
pancreas
225
kidney
213
epithelium
205
heart
166
liver
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
31
AMP
Genome assembly (visualization)
hg19
82
GRCh38
1
hg18
Lab
31
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
hg19
organ_slims!
ovary
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
GRO-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
9
2
1
gastrocnemius medialis
4
1
muscle of leg
1
1
left ventricle myocardium
1
psoas muscle
1
in vitro differentiated cells
pancreatic endoderm
5
1
Hepatic endoderm
2
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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