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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
6
single cell RNA-seq
2
WGBS
2
total RNA-seq
1
DNase-seq
1
GRO-seq
1
pCHi-C
Assay category
26
DNA binding
8
Transcription
2
DNA methylation
1
DNA accessibility
Target of assay
22
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
Date released
10
October, 2019
9
May, 2019
6
August, 2021
4
December, 2017
3
February, 2018
2
February, 2020
2
July, 2019
1
January, 2018
1
June, 2019
1
March, 2020
Available data
29
bam
9
tsv
8
fastq
3
bigWig
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bed narrowPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
39
Homo sapiens
Biosample type
25
tissue
8
in vitro differentiated cells
6
primary cell
Organ
288
pancreas
225
kidney
213
epithelium
heart
166
liver
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
39
AMP
Genome assembly (visualization)
hg19
113
GRCh38
1
hg18
Lab
39
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
hg19
organ_slims!
heart
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
single cell RNA-seq
WGBS
total RNA-seq
DNase-seq
GRO-seq
pCHi-C
tissue
aorta
2
4
2
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
pulmonary artery
2
in vitro differentiated cells
pancreatic endoderm
5
1
Hepatic endoderm
2
primary cell
endothelial cell of umbilical vein
5
kidney capillary endothelial cell
1
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