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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 65ATAC-seq
  • 55total RNA-seq
  • 47WGBS
  • 28ChIP-seq
  • 8DNase-seq
  • 6MeRIP-seq
  • 2Capture-C
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1RNA microarray
Assay category
  • 73DNA accessibility
  • 55Transcription
  • 47DNA methylation
  • 28DNA binding
Target of assay
  • 28control
  • 3histone
  • 3histone modification
  • 3nucleotide modification
  • 2broad histone mark
  • 1narrow histone mark
Date released
  • 80May, 2022
  • 40February, 2023
  • 19September, 2020
  • 17May, 2021
  • 12August, 2017
  • 8June, 2019
  • 8October, 2019
  • 7August, 2020
  • 6February, 2021
  • 6November, 2020
  • 3August, 2021
  • 3December, 2017
  • 2November, 2019
  • 1December, 2019
  • 1May, 2019
Available data
  • 84fastq
  • 80zippedFastqFolder
  • 34bam
  • 16bigWig
  • 9tsv
  • 6bed bed3+
  • 6bed broadPeak
  • 6bed narrowPeak
  • 6bigBed broadPeak
  • 6bigBed narrowPeak
  • 2tagAlign
Organism
  • 212Homo sapiens
Biosample type
  • 179primary cell
  • 27cell line
  • 4in vitro differentiated cells
  • 3tissue
Organ
  • 288pancreas
  • 225kidney
  • 213epithelium
  • 205heart
  • 166liver
  • 122brain
  • 95connective tissue
  • 89bone element
  • 71blood vessel
  • 71vasculature
  • 65adipose tissue
  • 48artery
  • 27eye
  • 26limb
  • 23musculature of body
  • 20lung
  • 14blood
  • 14bodily fluid
  • 12nerve
  • 11spleen
  • 8embryo
  • 5gonad
  • 5ovary
  • 5vein
  • 4skeleton
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 149HPAP
  • 64AMP
Genome assembly (visualization)
  • hg19
  • 294GRCh38
Lab
  • 149Klaus Kaestner, Upenn
  • 58AMP-T2D consortium
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 30inconsistent ontology term
  • 1audit script error
assembly!
  • hg19
BIOSAMPLE
ASSAY

213 results

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Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
DNase-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell2942316
pancreatic beta cell1611166
endothelial cell of umbilical vein5
pancreatic acinar cell4
kidney tubule cell3
cell line
EndoC_BH1162621
in vitro differentiated cells
Hepatic endoderm2
hepatocyte1
pancreatic PP cell1
tissue
pigmented layer of retina2
renal glomerulus1
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