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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
63
ChIP-seq
36
ATAC-seq
22
total RNA-seq
8
WGBS
7
pCHi-C
3
DNase-seq
Assay category
115
Transcription
63
DNA binding
39
DNA accessibility
8
DNA methylation
Target of assay
37
histone
37
histone modification
21
control
20
broad histone mark
17
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
February, 2023
40
May, 2024
21
October, 2019
10
April, 2019
8
July, 2019
6
June, 2019
6
May, 2019
4
February, 2020
3
March, 2020
2
February, 2021
Available data
103
tsv
78
bed narrowPeak
49
bigWig
30
bam
6
bed bedMethyl
6
bigBed bedMethyl
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
2
tagAlign
Organism
232
Homo sapiens
Biosample type
226
tissue
4
primary cell
2
cell line
Organ
288
pancreas
225
kidney
213
epithelium
205
heart
166
liver
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
232
AMP
Genome assembly (visualization)
272
GRCh38
hg19
Lab
192
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
assembly!
hg19
organ_slims!
spleen
BIOSAMPLE
ASSAY
232 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
WGBS
pCHi-C
DNase-seq
tissue
left cardiac atrium
18
40
coronary artery
2
35
1
heart left ventricle
18
6
4
1
heart right ventricle
17
2
2
1
islet of Langerhans
2
1
14
4
+ See 13 more…
primary cell
cardiac fibroblast
2
1
retinal pigment epithelial cell
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
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