Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 93single cell RNA-seq
  • 60ChIP-seq
  • 35ATAC-seq
  • 8WGBS
  • 3DNase-seq
  • 3pCHi-C
  • 3total RNA-seq
Assay category
  • 96Transcription
  • 60DNA binding
  • 38DNA accessibility
  • 8DNA methylation
Target of assay
  • 35histone
  • 35histone modification
  • 20broad histone mark
  • 20control
  • 15narrow histone mark
  • 5RNA binding protein
  • 5transcription factor
Date released
  • 92August, 2021
  • 40May, 2024
  • 36February, 2023
  • 10April, 2019
  • 8July, 2019
  • 6May, 2019
  • 5June, 2019
  • 3February, 2020
  • 3March, 2020
  • 2February, 2021
Available data
  • 98tsv
  • 78bed narrowPeak
  • 49bigWig
  • 29bam
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 3bed bed3+
  • 3bed broadPeak
  • 3bigBed broadPeak
  • 3bigBed narrowPeak
  • 2tagAlign
Organism
  • 205Homo sapiens
Biosample type
  • 200tissue
  • 3primary cell
  • 2cell line
Organ
  • 288pancreas
  • 225kidney
  • 213epithelium
  • 205heart
  • 166liver
  • 122brain
  • 95connective tissue
  • 89bone element
  • 71blood vessel
  • 71vasculature
  • 65adipose tissue
  • 48artery
  • 27eye
  • 26limb
  • 23musculature of body
  • 20lung
  • 14blood
  • 14bodily fluid
  • 12nerve
  • 11spleen
  • 8embryo
  • 5gonad
  • 5ovary
  • 5vein
  • 4skeleton
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 205AMP
Genome assembly (visualization)
  • 266GRCh38
  • hg19
Lab
  • 165AMP-T2D consortium
  • 40Patrick T. Ellinor, Broad
Audit category:
  • 1inconsistent ontology term
assembly!
  • hg19
BIOSAMPLE
ASSAY

205 results

search-icontable-tab-icon
Clear Filters
single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
total RNA-seq
tissue
left cardiac atrium1840
coronary artery2351
heart left ventricle18641
heart right ventricle17221
right cardiac atrium18111
primary cell
cardiac fibroblast21
cell line
smooth muscle cell of the coronary artery2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego