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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 75ATAC-seq
  • 64single cell RNA-seq
  • 49total RNA-seq
  • 13ChIP-seq
  • 9DNase-seq
  • 6snATAC-seq
  • 3snDrop-seq
  • 2RNA microarray
  • 2STARR-seq
  • 2pCHi-C
Assay category
  • 113Transcription
  • 90DNA accessibility
  • 13DNA binding
Target of assay
  • 12control
  • 1RNA binding protein
  • 1transcription factor
Date released
  • 129August, 2021
  • 47September, 2023
  • 14May, 2023
  • 8February, 2021
  • 8June, 2019
  • 8October, 2019
  • 5April, 2019
  • 3December, 2019
  • 2March, 2020
  • 1May, 2019
Available data
  • 71bed narrowPeak
  • 64xls
  • 62txt
  • 20bam
  • 12tsv
  • 7bed bed3+
  • 7bed broadPeak
  • 7bigBed broadPeak
  • 7bigBed narrowPeak
  • 7bigWig
  • 5csv
Organism
  • 225Homo sapiens
Biosample type
  • 207tissue
  • 11primary cell
  • 7cell line
Organ
  • 288pancreas
  • 225kidney
  • 213epithelium
  • 205heart
  • 166liver
  • 122brain
  • 95connective tissue
  • 89bone element
  • 71blood vessel
  • 71vasculature
  • 65adipose tissue
  • 48artery
  • 27eye
  • 26limb
  • 23musculature of body
  • 20lung
  • 14blood
  • 14bodily fluid
  • 12nerve
  • 11spleen
  • 8embryo
  • 5gonad
  • 5ovary
  • 5vein
  • 4skeleton
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 178AMP
  • 47KPMP
Genome assembly (visualization)
  • 205GRCh38
  • hg19
Lab
  • 141Katalin Susztak, Upenn
  • 47KPMP
  • 35AMP-T2D consortium
  • 2Bing Ren, UCSD
Audit category:
  • 7audit script error
  • 7inconsistent ontology term
assembly!
  • hg19
BIOSAMPLE
ASSAY

225 results

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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
DNase-seq
snATAC-seq
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
tissue
kidney75644976
kidney (Cortex-Medulla)1
kidney (cortex)1
kidney (medulla)1
kidney interstitium1
primary cell
kidney tubule cell3
epithelial cell of proximal tubule2
glomerular visceral epithelial cell2
kidney glomerular epithelial cell2
kidney capillary endothelial cell1
cell line
HEK293T2
RCC 7860 vector11
RCC 7860 HIF1a re-expression1
RCC 7860 HIF2a over-expression1
RCC 7860 VHL1
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