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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ATAC-seq
75
total RNA-seq
72
ChIP-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
pCHi-C
Assay category
94
DNA accessibility
75
Transcription
72
DNA binding
51
DNA methylation
1
3D chromatin structure
Target of assay
67
control
10
histone
10
histone modification
5
broad histone mark
5
narrow histone mark
5
nucleotide modification
Date released
86
May, 2022
56
February, 2023
29
August, 2017
27
October, 2019
19
September, 2020
18
May, 2021
11
October, 2018
10
November, 2020
8
January, 2021
7
August, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
November, 2018
4
September, 2017
3
February, 2020
3
March, 2020
2
June, 2019
2
March, 2019
2
November, 2019
1
August, 2022
1
May, 2019
Available data
108
fastq
80
zippedFastqFolder
70
bam
16
bigWig
11
tsv
6
txt
5
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
305
Homo sapiens
Biosample type
161
primary cell
111
tissue
34
cell line
1
in vitro differentiated cells
Organ
288
pancreas
225
kidney
213
epithelium
205
heart
166
liver
122
brain
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
149
HPAP
130
AMP
28
T1D
Genome assembly (visualization)
hg19
689
GRCh38
Lab
149
Klaus Kaestner, Upenn
111
AMP-T2D consortium
33
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
26
inconsistent ontology term
1
audit script error
assembly!
hg19
organ_slims!
connective tissue
musculature of body
BIOSAMPLE
ASSAY
307 results
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ATAC-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
MeRIP-seq
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
29
42
6
31
pancreatic beta cell
16
11
6
16
pancreatic acinar cell
4
tissue
islet of Langerhans
16
18
20
7
4
1
body of pancreas
1
9
2
2
tibial nerve
1
11
pancreas
1
3
2
4
1
tibial artery
1
5
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cell line
EndoC_BH1
16
2
6
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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