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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 123ChIP-seq
  • 30total RNA-seq
  • 5WGBS
  • 2STARR-seq
  • 2pCHi-C
  • 1DNase-seq
  • 1Hi-C
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 123DNA binding
  • 31Transcription
  • 5DNA methylation
  • 13D chromatin structure
  • 1DNA accessibility
  • 1DNA sequencing
Target of assay
  • 94control
  • 20histone
  • 20histone modification
  • 12broad histone mark
  • 9transcription factor
  • 8narrow histone mark
  • 4recombinant protein
  • 3RNA binding protein
Date released
  • 49November, 2017
  • 34August, 2017
  • 24May, 2020
  • 20May, 2022
  • 17August, 2021
  • 13December, 2017
  • 4November, 2018
  • 1December, 2018
  • 1February, 2020
  • 1February, 2021
  • 1July, 2019
  • 1March, 2020
Available data
  • 96bam
  • 75fastq
  • 44tagAlign
  • 12tsv
  • 5bigWig
  • 4bed narrowPeak
  • 4bigBed narrowPeak
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1csv
  • 1vcf
Organism
  • 166Homo sapiens
Biosample type
  • 93tissue
  • 71cell line
  • 1in vitro differentiated cells
  • 1primary cell
Organ
  • 288pancreas
  • 225kidney
  • 213epithelium
  • 205heart
  • 166liver
  • 122brain
  • 95connective tissue
  • 89bone element
  • 71blood vessel
  • 71vasculature
  • 65adipose tissue
  • 48artery
  • 27eye
  • 26limb
  • 23musculature of body
  • 20lung
  • 14blood
  • 14bodily fluid
  • 12nerve
  • 11spleen
  • 8embryo
  • 5gonad
  • 5ovary
  • 5vein
  • 4skeleton
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 166AMP
Genome assembly (visualization)
  • hg19
  • 531GRCh38
Lab
  • 130AMP-T2D consortium
  • 20Karen Mohlke, UNC
  • 16Bing Ren, UCSD
Audit category:
  • 1missing controlled_by
assembly!
  • hg19
BIOSAMPLE
ASSAY

166 results

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Clear Filters
ChIP-seq
total RNA-seq
WGBS
STARR-seq
pCHi-C
DNase-seq
Hi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver6220311
right lobe of liver3111
cell line
HepG256912111
in vitro differentiated cells
hepatocyte1
primary cell
hepatocyte1
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