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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 81ATAC-seq
  • 73total RNA-seq
  • 55ChIP-seq
  • 51WGBS
  • 11snATAC-seq
  • 10MeRIP-seq
  • 2Capture-C
  • 2DNase-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 94DNA accessibility
  • 73Transcription
  • 55DNA binding
  • 51DNA methylation
  • 13D chromatin structure
Target of assay
  • 51control
  • 9histone
  • 9histone modification
  • 5broad histone mark
  • 5nucleotide modification
  • 4narrow histone mark
Date released
  • 86May, 2022
  • 56February, 2023
  • 29August, 2017
  • 19September, 2020
  • 18May, 2021
  • 11October, 2018
  • 10November, 2020
  • 10October, 2019
  • 8January, 2021
  • 7August, 2020
  • 6February, 2021
  • 4August, 2021
  • 4July, 2018
  • 4November, 2018
  • 4September, 2017
  • 3March, 2020
  • 2June, 2019
  • 2March, 2019
  • 2November, 2019
  • 1August, 2022
  • 1February, 2020
  • 1May, 2019
Available data
  • 108fastq
  • 80zippedFastqFolder
  • 54bam
  • 16bigWig
  • 9tsv
  • 6txt
  • 5tagAlign
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bed bed3+
  • 2bed narrowPeak
  • 2bigBed broadPeak
  • 2bigBed narrowPeak
  • 1bedpe bed3+
Organism
  • 286Homo sapiens
Biosample type
  • 161primary cell
  • 92tissue
  • 34cell line
  • 1in vitro differentiated cells
Organ
  • 288pancreas
  • 225kidney
  • 213epithelium
  • 205heart
  • 166liver
  • 122brain
  • 95connective tissue
  • 89bone element
  • 71blood vessel
  • 71vasculature
  • 65adipose tissue
  • 48artery
  • 27eye
  • 26limb
  • 24musculature of body
  • 20lung
  • 14blood
  • 14bodily fluid
  • 12nerve
  • 11spleen
  • 8embryo
  • 5gonad
  • 5ovary
  • 5vein
  • 4skeleton
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 149HPAP
  • 111AMP
  • 28T1D
Genome assembly (visualization)
  • hg19
  • 635GRCh38
Lab
  • 149Klaus Kaestner, Upenn
  • 92AMP-T2D consortium
  • 33Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 2Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 26inconsistent ontology term
  • 1audit script error
assembly!
  • hg19
BIOSAMPLE
ASSAY

288 results

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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
MeRIP-seq
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
primary cell
pancreatic alpha cell2942631
pancreatic beta cell1611616
pancreatic acinar cell4
tissue
islet of Langerhans161819741
body of pancreas1922
pancreas13241
endocrine pancreas2
cell line
EndoC_BH1162621
Panc17
in vitro differentiated cells
pancreatic PP cell1
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