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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
20
ChIP-seq
6
single cell RNA-seq
3
pCHi-C
3
total RNA-seq
2
WGBS
Assay category
35
DNA accessibility
20
DNA binding
9
Transcription
2
DNA methylation
Target of assay
20
control
3
histone
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
7
October, 2019
6
August, 2021
3
February, 2020
2
February, 2021
2
July, 2019
2
March, 2020
1
May, 2021
Available data
35
bed narrowPeak
22
bam
11
tsv
2
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
Organism
69
Homo sapiens
Biosample type
65
tissue
2
cell line
2
primary cell
Organ
279
pancreas
kidney
210
epithelium
170
heart
146
liver
89
bone element
68
blood vessel
68
vasculature
52
brain
52
connective tissue
48
artery
35
adipose tissue
25
eye
25
limb
20
lung
17
musculature of body
14
blood
14
bodily fluid
12
nerve
11
spleen
7
embryo
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
68
AMP
1
T1D
Genome assembly (visualization)
124
GRCh38
hg19
Lab
68
AMP-T2D consortium
1
Kyle Gaulton, UCSD
assembly!
hg19
organ_slims!
kidney
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
69 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
total RNA-seq
WGBS
tissue
coronary artery
35
2
1
aorta
2
4
1
2
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
2
primary cell
endothelial cell of umbilical vein
2
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