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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 565ChIP-seq
  • 270ATAC-seq
  • 263single cell RNA-seq
  • 248total RNA-seq
  • 86RNA microarray
  • 82snATAC-seq
  • 75WGBS
  • 53pCHi-C
  • 26DNase-seq
  • 10MeRIP-seq
  • 7Hi-C
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2Capture-C
  • 2HiChIP
  • 2RRBS
  • 1DNAme array
  • 1whole genome sequencing assay
Assay category
  • 565DNA binding
  • 511Transcription
  • 378DNA accessibility
  • 78DNA methylation
  • 73D chromatin structure
  • 1DNA sequencing
Target of assay
  • 310control
  • 233histone
  • 233histone modification
  • 130broad histone mark
  • 103narrow histone mark
  • 27transcription factor
  • 14RNA binding protein
  • 5nucleotide modification
  • 4recombinant protein
Date released
  • 258August, 2021
  • 161May, 2022
  • 159February, 2023
  • 141February, 2021
  • 134August, 2017
  • 125November, 2017
  • 97October, 2019
  • 83May, 2021
  • 81May, 2020
  • 59September, 2020
  • 47September, 2023
  • 40May, 2024
  • 32March, 2020
  • 31June, 2019
  • 29October, 2018
  • 25February, 2020
  • 23May, 2019
  • 18April, 2020
  • 17December, 2017
  • 17July, 2019
  • 17November, 2018
  • 16January, 2021
  • 15April, 2019
  • 14May, 2023
  • 10November, 2020
  • 10October, 2017
  • 8February, 2018
  • 7August, 2020
  • 5December, 2018
  • 5December, 2019
  • 5January, 2018
  • 4January, 2019
  • 4July, 2018
  • 4September, 2017
  • 2March, 2019
  • 2November, 2019
  • 1August, 2018
  • 1August, 2022
  • 1March, 2023
  • 1September, 2018
Available data
  • 393bam
  • 349fastq
  • 219bed narrowPeak
  • 198tsv
  • 159tagAlign
  • 156txt
  • 153bigWig
  • 153zippedFastqFolder
  • 79bigBed narrowPeak
  • 64xls
  • 24bed broadPeak
  • 23bed bed3+
  • 23bigBed broadPeak
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 8csv
  • 2bedpe bed3+
  • 1hic
  • 1vcf
Organism
  • 1709Homo sapiens
Biosample type
  • 1019tissue
  • 460primary cell
  • 128cell line
  • 97in vitro differentiated cells
  • 5stem cell
Organ
  • 286pancreas
  • 225kidney
  • 212epithelium
  • 205heart
  • 166liver
  • 122brain
  • 94connective tissue
  • 89bone element
  • 71blood vessel
  • 71vasculature
  • 64adipose tissue
  • 48artery
  • 27eye
  • 26limb
  • 23musculature of body
  • 19lung
  • 14blood
  • 14bodily fluid
  • 12nerve
  • 11spleen
  • 8embryo
  • 5gonad
  • 5ovary
  • 5vein
  • 4skeleton
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 1264AMP
  • 321HPAP
  • 58T1D
  • 47KPMP
  • 18LungMap
  • 1ITG
Genome assembly (visualization)
  • hg19
  • 3121GRCh38
  • 5hg18
Lab
  • 983AMP-T2D consortium
  • 321Klaus Kaestner, Upenn
  • 141Katalin Susztak, Upenn
  • 105Kyle Gaulton, UCSD
  • 47KPMP
  • 40Patrick T. Ellinor, Broad
  • 21Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 18Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 139inconsistent ontology term
  • 37audit script error
Audit category:
  • 3missing controlled_by
assembly!
  • hg19
BIOSAMPLE
ASSAY

1709 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
DNase-seq
MeRIP-seq
Hi-C
GRO-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
Capture-C
HiChIP
RRBS
DNAme array
whole genome sequencing assay
tissue
kidney77564496
islet of Langerhans4026327441
liver6212031
bone element84
left cardiac atrium4018
primary cell
Langerhans cell8548
pancreatic alpha cell6294231
pancreatic beta cell6161116
exocrine cell39
naive thymus-derived CD4-positive, alpha-beta T cell22211
cell line
HepG256911121
EndoC_BH12166322
Panc17
GM128786
HEK293T2
in vitro differentiated cells
embryonic stem cell3851
adipocyte191
neural progenitor cell9
pancreatic endoderm51
cardiomyocytes (cardiac muscle cell)21
stem cell
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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