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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 566ChIP-seq
  • 270ATAC-seq
  • 83snATAC-seq
  • 75WGBS
  • 53pCHi-C
  • 26DNase-seq
  • 7Hi-C
  • 5GRO-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1RNA microarray
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 566DNA binding
  • 379DNA accessibility
  • 78DNA methylation
  • 73D chromatin structure
  • 4Transcription
  • 1DNA sequencing
Target of assay
  • 306control
  • 233histone
  • 233histone modification
  • 130broad histone mark
  • 103narrow histone mark
  • 27transcription factor
  • 14RNA binding protein
  • 4recombinant protein
Date released
  • 135August, 2017
  • 125November, 2017
  • 101May, 2022
  • 89August, 2021
  • 83October, 2019
  • 79May, 2020
  • 76May, 2021
  • 66February, 2023
  • 40May, 2024
  • 36February, 2021
  • 31June, 2019
  • 30March, 2020
  • 29October, 2018
  • 23May, 2019
  • 17December, 2017
  • 17July, 2019
  • 16January, 2021
  • 16November, 2018
  • 15April, 2019
  • 11May, 2023
  • 10April, 2020
  • 10October, 2017
  • 8February, 2018
  • 7August, 2020
  • 5December, 2018
  • 5January, 2018
  • 5March, 2023
  • 4January, 2019
  • 4September, 2017
  • 3September, 2020
  • 2March, 2019
  • 2November, 2019
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 388bam
  • 219bed narrowPeak
  • 216fastq
  • 160tagAlign
  • 153bigWig
  • 101zippedFastqFolder
  • 79bigBed narrowPeak
  • 64xls
  • 49tsv
  • 24bed broadPeak
  • 23bed bed3+
  • 23bigBed broadPeak
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bedpe bed3+
  • 1hic
  • 1txt
  • 1vcf
Organism
  • 1094Homo sapiens
Biosample type
  • 620tissue
  • 278primary cell
  • 112cell line
  • 86in vitro differentiated cells
  • 7stem cell
Organ
  • 205pancreas
  • 151epithelium
  • 133liver
  • 110brain
  • 109heart
  • 105kidney
  • 89connective tissue
  • 63adipose tissue
  • 62blood vessel
  • 62vasculature
  • 44artery
  • 23limb
  • 20musculature of body
  • 14blood
  • 14bodily fluid
  • 11lung
  • 11nerve
  • 11spleen
  • 8embryo
  • 8eye
  • 5gonad
  • 5ovary
  • 5vein
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone element
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 893AMP
  • 144HPAP
  • 51T1D
  • 10LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • hg19
  • 1797GRCh38
  • 5hg18
Lab
  • 727AMP-T2D consortium
  • 144Klaus Kaestner, Upenn
  • 88Kyle Gaulton, UCSD
  • 81Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Xin Sun, UCSD
  • 6Bing Ren, UCSD
  • 4Anna Gloyn, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 43inconsistent ontology term
  • 28audit script error
Audit category:
  • 3missing controlled_by
assembly!
  • hg19
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

1103 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
DNase-seq
Hi-C
GRO-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
RRBS
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
DNAme array
MPRA
RNA microarray
shRNA RNA-seq
siRNA RNA-seq
...and 1 more
tissue
kidney7756
islet of Langerhans4026741
liver6231
left cardiac atrium40
subcutaneous abdominal adipose tissue353
primary cell
pancreatic alpha cell62931
Langerhans cell48
pancreatic beta cell61616
naive thymus-derived CD4-positive, alpha-beta T cell2221
CD4-positive, alpha-beta memory T cell22
cell line
HepG256111
EndoC_BH12163221
Panc17
GM128786
EndoC-BH111
in vitro differentiated cells
embryonic stem cell381
adipocyte19
neural progenitor cell9
pancreatic endoderm51
Hepatic endoderm2
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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