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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 85ChIP-seq
  • 80ATAC-seq
  • 48total RNA-seq
  • 45pCHi-C
  • 15DNase-seq
  • 11snATAC-seq
  • 10MeRIP-seq
  • 8WGBS
  • 6single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3Hi-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 106DNA accessibility
  • 85DNA binding
  • 54Transcription
  • 9DNA methylation
  • 33D chromatin structure
Target of assay
  • 55control
  • 20transcription factor
  • 15histone
  • 15histone modification
  • 11broad histone mark
  • 9RNA binding protein
  • 5nucleotide modification
  • 4narrow histone mark
  • 3recombinant protein
Date released
  • 58May, 2020
  • 41February, 2023
  • 39May, 2021
  • 29March, 2020
  • 27November, 2017
  • 25February, 2020
  • 20August, 2021
  • 15June, 2019
  • 15October, 2019
  • 10November, 2020
  • 9February, 2021
  • 6November, 2018
  • 6October, 2017
  • 5January, 2021
  • 2December, 2017
  • 2December, 2019
  • 2March, 2019
  • 2May, 2019
  • 1April, 2019
  • 1August, 2017
  • 1December, 2018
  • 1January, 2019
  • 1July, 2019
  • 1March, 2023
  • 1May, 2022
  • 1September, 2018
Available data
  • 77bam
  • 76tsv
  • 46fastq
  • 19bigWig
  • 18bed narrowPeak
  • 17bigBed narrowPeak
  • 15tagAlign
  • 14bed broadPeak
  • 13bed bed3+
  • 13bigBed broadPeak
  • 4txt
  • 2csv
  • 1bed bedMethyl
  • 1bedpe bed3+
  • 1bigBed bedMethyl
  • 1hic
Organism
  • 321Homo sapiens
Biosample type
  • 116primary cell
  • 110tissue
  • 61cell line
  • 33in vitro differentiated cells
  • 1stem cell
Organ
  • 51pancreas
  • 41liver
  • 25brain
  • 25epithelium
  • 21kidney
  • 11heart
  • 10blood vessel
  • 10connective tissue
  • 10vasculature
  • 6blood
  • 6bodily fluid
  • 5bone element
  • 5musculature of body
  • 4limb
  • 4skeleton
  • 4vein
  • 3adipose tissue
  • 3artery
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1eye
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 269AMP
  • 45T1D
  • 6HPAP
  • 1ITG
Genome assembly (visualization)
  • hg19
  • 1004GRCh38
Lab
  • 233AMP-T2D consortium
  • 59Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 6Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
  • 4Katalin Susztak, Upenn
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 28inconsistent ontology term
  • 2audit script error
assembly!
  • hg19
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

321 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
DNase-seq
snATAC-seq
MeRIP-seq
WGBS
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
snDrop-seq
DNAme array
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell22211
CD4-positive, alpha-beta memory T cell22
macrophage111
pancreatic alpha cell6
endothelial cell of umbilical vein4
tissue
islet of Langerhans138341
brain6
kidney14
heart21
liver111
cell line
HepG2291121
EndoC_BH163
Panc15
GM128784
HEK293T2
in vitro differentiated cells
embryonic stem cell1151
neural progenitor cell9
cardiomyocytes (cardiac muscle cell)12
adipocyte1
hepatocyte1
stem cell
mesenchymal stem cell1
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