Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 48total RNA-seq
  • 34ChIP-seq
  • 27pCHi-C
  • 25ATAC-seq
  • 12DNase-seq
  • 4MeRIP-seq
  • 4single cell RNA-seq
  • 4snATAC-seq
  • 2Hi-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 52Transcription
  • 41DNA accessibility
  • 34DNA binding
  • 23D chromatin structure
  • 1DNA methylation
Target of assay
  • 13control
  • 12transcription factor
  • 11histone
  • 11histone modification
  • 8broad histone mark
  • 6RNA binding protein
  • 3narrow histone mark
  • 2nucleotide modification
Date released
  • 38February, 2023
  • 26May, 2021
  • 25February, 2020
  • 25March, 2020
  • 12August, 2021
  • 11June, 2019
  • 6October, 2017
  • 4November, 2020
  • 3February, 2021
  • 2January, 2021
  • 2March, 2019
  • 2May, 2020
  • 2October, 2019
  • 1April, 2019
  • 1December, 2017
  • 1March, 2023
  • 1May, 2022
  • 1September, 2018
Available data
  • 63tsv
  • 23bam
  • 15tagAlign
  • 11bed broadPeak
  • 11bed narrowPeak
  • 11bigWig
  • 10bed bed3+
  • 10bigBed broadPeak
  • 10bigBed narrowPeak
  • 4txt
  • 3fastq
  • 2csv
  • 1bedpe bed3+
  • 1hic
Organism
  • 163Homo sapiens
Biosample type
  • 97tissue
  • 35primary cell
  • 30in vitro differentiated cells
  • 1stem cell
Organ
  • 30pancreas
  • 24brain
  • 10heart
  • 9connective tissue
  • 8kidney
  • 5epithelium
  • 5liver
  • 4blood vessel
  • 4bone element
  • 4musculature of body
  • 4skeleton
  • 4vasculature
  • 3adipose tissue
  • 3limb
  • 2artery
  • 2blood
  • 2bodily fluid
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1eye
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 136AMP
  • 26T1D
  • 1ITG
Genome assembly (visualization)
  • hg19
  • 427GRCh38
Lab
  • 114AMP-T2D consortium
  • 40Kyle Gaulton, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Bing Ren, UCSD
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 13inconsistent ontology term
assembly!
  • hg19
BIOSAMPLE
ASSAY

163 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
DNase-seq
MeRIP-seq
single cell RNA-seq
snATAC-seq
Hi-C
snDrop-seq
DNAme array
tissue
islet of Langerhans813421
brain6
heart21
liver111
Ammon's horn11
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell121
gabaergic neuron3
glutamatergic neuron3
microglial cell/astrocyte3
monocyte111
in vitro differentiated cells
embryonic stem cell5111
neural progenitor cell9
adipocyte1
cardiomyocytes (cardiac muscle cell)1
immature adipocyte1
stem cell
mesenchymal stem cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego