Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 55ATAC-seq
  • 51ChIP-seq
  • 18pCHi-C
  • 8WGBS
  • 7snATAC-seq
  • 6MeRIP-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 2single cell RNA-seq
  • 1Hi-C
Assay category
  • 65DNA accessibility
  • 51DNA binding
  • 8DNA methylation
  • 2Transcription
  • 13D chromatin structure
Target of assay
  • 42control
  • 8transcription factor
  • 4histone
  • 4histone modification
  • 3RNA binding protein
  • 3broad histone mark
  • 3nucleotide modification
  • 3recombinant protein
  • 1narrow histone mark
Date released
  • 56May, 2020
  • 27November, 2017
  • 13May, 2021
  • 13October, 2019
  • 8August, 2021
  • 6February, 2021
  • 6November, 2018
  • 6November, 2020
  • 4June, 2019
  • 4March, 2020
  • 3February, 2023
  • 3January, 2021
  • 2December, 2019
  • 2May, 2019
  • 1August, 2017
  • 1December, 2017
  • 1December, 2018
  • 1January, 2019
  • 1July, 2019
Available data
  • 54bam
  • 43fastq
  • 13tsv
  • 8bigWig
  • 7bed narrowPeak
  • 7bigBed narrowPeak
  • 3bed bed3+
  • 3bed broadPeak
  • 3bigBed broadPeak
  • 1bed bedMethyl
  • 1bigBed bedMethyl
Organism
  • 158Homo sapiens
Biosample type
  • 81primary cell
  • 61cell line
  • 13tissue
  • 3in vitro differentiated cells
Organ
  • 36liver
  • 21pancreas
  • 20epithelium
  • 13kidney
  • 6blood vessel
  • 6vasculature
  • 4blood
  • 4bodily fluid
  • 4vein
  • 1artery
  • 1bone element
  • 1bone marrow
  • 1brain
  • 1connective tissue
  • 1heart
  • 1limb
  • 1mammary gland
  • 1musculature of body
  • 1thymus
Project
  • 133AMP
  • 19T1D
  • 6HPAP
Genome assembly (visualization)
  • hg19
  • 577GRCh38
Lab
  • 119AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 4Katalin Susztak, Upenn
Audit category:
  • 15inconsistent ontology term
  • 2audit script error
assembly!
  • hg19
BIOSAMPLE
ASSAY

158 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
pCHi-C
WGBS
snATAC-seq
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
DNase-seq
single cell RNA-seq
Hi-C
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
macrophage11
pancreatic alpha cell6
endothelial cell of umbilical vein4
cell line
HepG2291121
EndoC_BH163
Panc15
GM128784
HEK293T2
tissue
kidney4
pancreas2
islet of Langerhans1
middle frontal gyrus1
right atrium auricular region1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
hepatocyte1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego