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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 481ChIP-seq
  • 257single cell RNA-seq
  • 200total RNA-seq
  • 190ATAC-seq
  • 87RNA microarray
  • 72snATAC-seq
  • 67WGBS
  • 11DNase-seq
  • 8pCHi-C
  • 5GRO-seq
  • 4Hi-C
  • 2Capture-C
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snDrop-seq
  • 1whole genome sequencing assay
Assay category
  • 481DNA binding
  • 461Transcription
  • 273DNA accessibility
  • 69DNA methylation
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 256control
  • 218histone
  • 218histone modification
  • 119broad histone mark
  • 99narrow histone mark
  • 7transcription factor
  • 5RNA binding protein
  • 1recombinant protein
Date released
  • 239August, 2021
  • 160May, 2022
  • 134August, 2017
  • 132February, 2021
  • 119February, 2023
  • 98November, 2017
  • 82October, 2019
  • 59September, 2020
  • 47September, 2023
  • 44May, 2021
  • 40May, 2024
  • 29October, 2018
  • 23May, 2020
  • 21May, 2019
  • 19April, 2020
  • 16July, 2019
  • 16June, 2019
  • 15December, 2017
  • 14April, 2019
  • 14May, 2023
  • 11January, 2021
  • 11November, 2018
  • 8February, 2018
  • 7August, 2020
  • 5January, 2018
  • 4December, 2018
  • 4July, 2018
  • 4March, 2023
  • 4October, 2017
  • 4September, 2017
  • 3December, 2019
  • 3January, 2019
  • 3March, 2020
  • 2November, 2019
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 317bam
  • 304fastq
  • 201bed narrowPeak
  • 153txt
  • 153zippedFastqFolder
  • 145tagAlign
  • 134bigWig
  • 122tsv
  • 64xls
  • 62bigBed narrowPeak
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 10bed bed3+
  • 10bed broadPeak
  • 10bigBed broadPeak
  • 6csv
  • 1bedpe bed3+
  • 1vcf
Organism
  • 1388Homo sapiens
Biosample type
  • 912tissue
  • 344primary cell
  • 71cell line
  • 64in vitro differentiated cells
  • 6stem cell
Organ
  • 237pancreas
  • 204kidney
  • 194heart
  • 188epithelium
  • 125liver
  • 97brain
  • 85connective tissue
  • 84bone element
  • 62adipose tissue
  • 61blood vessel
  • 61vasculature
  • 45artery
  • 26eye
  • 22limb
  • 19lung
  • 18musculature of body
  • 11nerve
  • 10spleen
  • 8blood
  • 8bodily fluid
  • 8embryo
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
  • 1vein
Project
  • 999AMP
  • 315HPAP
  • 47KPMP
  • 19LungMap
  • 13T1D
  • 4community
Genome assembly (visualization)
  • 2123GRCh38
  • hg19
  • 5hg18
Lab
  • 754AMP-T2D consortium
  • 315Klaus Kaestner, Upenn
  • 137Katalin Susztak, Upenn
  • 47KPMP
  • 46Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 15Bing Ren, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 111inconsistent ontology term
  • 35audit script error
Audit category:
  • 3missing controlled_by
assembly!
  • hg19
BIOSAMPLE
ASSAY

1397 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
WGBS
DNase-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
HiChIP
RRBS
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
MPRA
STARR-seq
shRNA RNA-seq
...and 3 more
tissue
kidney66449752
islet of Langerhans40241344
bone element84
liver61203
left cardiac atrium4018
primary cell
Langerhans cell8548
pancreatic alpha cell6422925
pancreatic beta cell5111616
exocrine cell39
peripheral blood mononuclear cell6
cell line
HepG2279
EndoC_BH1216221
EndoC-BH11
GM128782
Panc12
in vitro differentiated cells
embryonic stem cell27
adipocyte19
pancreatic endoderm51
Hepatic endoderm2
definitive endodermal cell11
stem cell
SB Ad3.111
hESC1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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