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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
241
ChIP-seq
Assay category
241
DNA binding
Target of assay
233
histone
233
histone modification
132
narrow histone mark
101
broad histone mark
8
transcription factor
Date released
87
May, 2021
54
November, 2017
40
October, 2019
19
May, 2020
17
August, 2017
13
August, 2021
6
October, 2017
5
February, 2021
Available data
2675
bam
2638
bigWig
1494
bed narrowPeak
1254
tsv
923
bigBed narrowPeak
770
fastq
262
bed broadPeak
247
bigBed broadPeak
241
tagAlign
239
bed bed3+
xls
17
bed bedMethyl
17
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
235
Homo sapiens
Biosample type
116
tissue
95
primary cell
16
in vitro differentiated cells
14
cell line
Organ
82
brain
31
liver
8
pancreas
epithelium
4
artery
4
blood vessel
4
heart
4
vasculature
1
pituitary gland
Project
157
AMP
84
T1D
Genome assembly (visualization)
241
GRCh38
233
hg19
Lab
157
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
9
inconsistent control read length
2
inconsistent assembly
assembly!
hg18
files.file_type!
xls
organ_slims!
epithelium
BIOSAMPLE
ASSAY
241 results
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ChIP-seq
tissue
liver
19
caudate nucleus
12
substantia nigra
12
layer of hippocampus
11
brain
6
+ See 40 more…
primary cell
monocyte
84
skeletal muscle myoblast
11
in vitro differentiated cells
neural progenitor cell
13
cardiomyocytes
3
cell line
HepG2
9
smooth muscle cell of the coronary artery
4
iPSC derived cell line
1
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