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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
ChIP-seq
Assay category
242
DNA binding
Target of assay
237
histone
237
histone modification
135
narrow histone mark
102
broad histone mark
5
transcription factor
Date released
89
May, 2021
54
November, 2017
40
October, 2019
19
May, 2020
17
August, 2017
16
August, 2021
6
October, 2017
1
February, 2021
Available data
2866
bam
2845
bigWig
1558
bed narrowPeak
1346
tsv
973
bigBed narrowPeak
951
fastq
278
bed broadPeak
263
bigBed broadPeak
254
bed bed3+
242
tagAlign
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
236
Homo sapiens
Biosample type
116
tissue
98
primary cell
18
in vitro differentiated cells
10
cell line
Organ
82
brain
31
liver
8
pancreas
5
epithelium
artery
4
blood vessel
4
heart
4
vasculature
1
pituitary gland
Project
158
AMP
84
T1D
Genome assembly (visualization)
242
GRCh38
234
hg19
Lab
158
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
9
inconsistent control read length
2
inconsistent assembly
assembly!
hg18
organ_slims!
artery
stomach
BIOSAMPLE
ASSAY
242 results
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ChIP-seq
tissue
liver
19
caudate nucleus
12
substantia nigra
12
layer of hippocampus
11
brain
6
+ See 40 more…
primary cell
monocyte
84
skeletal muscle myoblast
11
hepatocyte
3
in vitro differentiated cells
neural progenitor cell
13
cardiomyocytes
3
pancreatic PP cell
2
cell line
HepG2
9
iPSC derived cell line
1
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